BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1689934	183 (0.900)	11 (0.060)	9/150	NT	5.5%	intergenic (‑69/+67)	dnaJ/dnaK	Chaperone protein DnaJ/Chaperone protein DnaK
*	?	USA300TCH1516_ALE	= 1689961	205 (1.070)	11 (0.060)	9/150	NT	5.5%	intergenic (‑96/+40)	dnaJ/dnaK	Chaperone protein DnaJ/Chaperone protein DnaK

Only 100 of 238 total aligned reads displayed.

TCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGCATCTTCTACAGT  >  USA300TCH1516_ALE/1689871‑1690051

tctctcCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTTttgactttga                                                                                            >  2:1980540/1‑91 (MQ=255)

      cTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTc                                                                                      <  2:3250201/91‑1 (MQ=255)

      cTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTc                                                                                      <  1:581814/91‑1 (MQ=255)

        tttCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAg                                                                                    >  1:3684723/1‑91 (MQ=255)

           cTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATc                                                                                 <  2:1038058/91‑1 (MQ=255)

            ttaattaaCTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCa                                                                                <  1:102451/91‑1 (MQ=255)

            ttaattaaCTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCa                                                                                <  2:2812708/91‑1 (MQ=255)

             taattaaCTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCAt                                                                               <  1:705241/91‑1 (MQ=255)

             taattaaCTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCAt                                                                               <  1:3220162/91‑1 (MQ=255)

                ttaaCTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGac                                                                            >  1:3089591/1‑91 (MQ=255)

                 taaCTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGaca                                                                           >  1:2604698/1‑91 (MQ=255)

                   aCTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGacaac                                                                         <  2:2955988/91‑1 (MQ=255)

                   aCTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGacaac                                                                         <  2:1868597/91‑1 (MQ=255)

                     tCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACAt                                                                       >  1:2252009/1‑91 (MQ=255)

                     tCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACAt                                                                       <  2:1596647/91‑1 (MQ=255)

                     tCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACAt                                                                       >  1:1704999/1‑91 (MQ=255)

                      cATATGGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACAtt                                                                      <  2:3641848/91‑1 (MQ=255)

                      cATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACAtt                                                                      <  2:40973/91‑1 (MQ=255)

                       atatAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTc                                                                     >  2:3112338/1‑91 (MQ=255)

                       atatAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTc                                                                     <  1:1811337/91‑1 (MQ=255)

                        tataGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCt                                                                    <  2:2740067/91‑1 (MQ=255)

                        tataGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCt                                                                    <  2:2990409/91‑1 (MQ=255)

                        tataGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCt                                                                    <  1:2996784/91‑1 (MQ=255)

                        tataGTTCAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCt                                                                    <  2:2511825/91‑1 (MQ=255)

                          taGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTaa                                                                  <  1:3412662/91‑1 (MQ=255)

                          taGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTaa                                                                  <  1:3576038/91‑1 (MQ=255)

                          taGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTaa                                                                  >  2:3928435/1‑91 (MQ=255)

                          taGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTaa                                                                  <  2:1782223/91‑1 (MQ=255)

                           aGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAat                                                                 <  1:1991011/91‑1 (MQ=255)

                              ttAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAattgt                                                              <  1:1503437/91‑1 (MQ=255)

                              ttAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAattgt                                                              <  2:3090045/91‑1 (MQ=255)

                                aaCGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTCCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAattgtat                                                            >  2:318413/1‑91 (MQ=255)

                                    tAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGtt                                                        >  1:2458687/1‑91 (MQ=255)

                                    tAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGtt                                                        <  1:3611089/91‑1 (MQ=255)

                                     aaTATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGttt                                                       >  2:758061/1‑91 (MQ=255)

                                      atatGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTa                                                      <  1:3400635/91‑1 (MQ=255)

                                      atatGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACAATCTAATTGTATTGTTTa                                                      >  2:2885018/1‑91 (MQ=255)

                                       tatGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTaa                                                     <  2:2163225/91‑1 (MQ=255)

                                          gTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAatta                                                  >  1:1619995/1‑91 (MQ=255)

                                           tCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGGTCATGACAACATTCTAATTGTATTGTTTAattat                                                 <  2:3749163/91‑1 (MQ=255)

                                           tCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATACCAATTGTATTGTTTAattat                                                 <  2:3072340/91‑1 (MQ=255)

                                            cATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAattatt                                                <  2:2492651/91‑1 (MQ=255)

                                            cATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAattatt                                                <  1:2409379/91‑1 (MQ=255)

                                            cATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAattatt                                                <  1:3251507/91‑1 (MQ=255)

                                             aTACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTAttt                                               <  1:2166055/91‑1 (MQ=255)

                                              tACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTAtttt                                              >  1:870996/1‑91 (MQ=255)

                                                 tATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTg                                           >  2:2948966/1‑91 (MQ=255)

                                                   tCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGCTCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtc                                         <  1:134518/91‑1 (MQ=255)

                                                   tCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtc                                         >  2:1438522/1‑91 (MQ=255)

                                                    ccAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtcg                                        <  2:824944/91‑1 (MQ=255)

                                                     cAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtcgt                                       <  2:3399239/91‑1 (MQ=255)

                                                     cAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtcgt                                       <  1:792384/91‑1 (MQ=255)

                                                        aTAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtcgtcgt                                    <  2:2825731/91‑1 (MQ=255)

                                                         tAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtcgtcgtc                                   <  1:1015383/91‑1 (MQ=255)

                                                         tAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtcgtcgtc                                   <  1:3008814/91‑1 (MQ=255)

                                                         tAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtcgtcgtc                                   <  1:3009554/91‑1 (MQ=255)

                                                         tAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTgtcgtcgtc                                   <  1:3934664/91‑1 (MQ=255)

                                                           aaaaGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAACTGTATTGTTTAATTATTTTTTGTCGTCGTCtt                                 >  2:3600363/1‑91 (MQ=255)

                                                            aaagccaaagccAATGTTCTATTGACTTTGActttttatttggatagtatgacatattacgttaaactatatgagttaattaagaaaagga                                <  1:3463509‑M2/91‑61 (MQ=255)

                                                            aaagccaaagccAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCttt                                <  1:3461404/91‑1 (MQ=255)

                                                            aaagccaaagccAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCttt                                >  1:1912967/1‑91 (MQ=255)

                                                            aaagccaaagccAATGTTCTATTGACTTTGACTATTCAGATCATGACAACATTCTAATTTTATTGTTTAATTATTTTTTGTCGTCGTCttt                                <  1:3512301/91‑1 (MQ=255)

                                                              agccaaagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTa                              >  2:2697279/1‑91 (MQ=255)

                                                               gccaaagccaaTGTTCTATTGACTTTGActttttatttggatagtatgacatattacgttaaactatatgagttaattaagaaaaggagag                             <  2:765284‑M2/91‑64 (MQ=255)

                                                               gccaaagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTAc                             <  1:380136/91‑1 (MQ=255)

                                                               gccaaagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTAc                             >  2:2269493/1‑91 (MQ=255)

                                                               gccaaagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTAc                             >  2:896754/1‑91 (MQ=255)

                                                               gccaaagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTAc                             <  2:1704784/91‑1 (MQ=255)

                                                                 caaagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTActt                           <  1:2120425/91‑1 (MQ=255)

                                                                  aatgcctaTGTTCTATTGACTTTGACTTTTTAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTActtc                          <  2:1232866/88‑1 (MQ=255)

                                                                   aagccaaTGTTCTATTGACTTTGGctttttatttggctagtatgacatcttacgttcaaccatatgagttaattaagaaaaggagagatag                         <  2:579041‑M2/91‑68 (MQ=255)

                                                                   aagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTActtct                         <  1:2344981/91‑1 (MQ=255)

                                                                   aagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTActtct                         <  2:518064/91‑1 (MQ=255)

                                                                   aagccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTActtct                         <  1:2799056/91‑1 (MQ=255)

                                                                    agccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTActtctt                        >  1:2851363/1‑91 (MQ=255)

                                                                    agccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTActtctt                        >  1:3091795/1‑91 (MQ=255)

                                                                    agccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTActtctt                        <  1:921360/91‑1 (MQ=255)

                                                                     gccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACCTTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCttt                       >  2:351790/1‑91 (MQ=255)

                                                                     gccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCttt                       >  2:2086194/1‑91 (MQ=255)

                                                                      ccaaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTa                      <  1:2504832/91‑1 (MQ=255)

                                                                        aaTGTTCTATTGACTTTGGctttttatttggatagtatgacatattacgttaaactatatgagttaattaagaaaaggagagatagctgtg                    <  2:956189‑M2/91‑73 (MQ=255)

                                                                        aaTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTaaa                    >  1:1207209/1‑91 (MQ=255)

                                                                         aTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAAt                   >  1:1367479/1‑91 (MQ=255)

                                                                         aTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAAt                   >  2:260407/1‑91 (MQ=255)

                                                                         aTGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAAt                   <  2:1197652/91‑1 (MQ=255)

                                                                          tGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAAtt                  >  2:67567/1‑91 (MQ=255)

                                                                           gTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTc                 <  1:349650/91‑1 (MQ=255)

                                                                           gTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTc                 <  1:1981449/91‑1 (MQ=255)

                                                                           gTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTc                 <  1:1111595/91‑1 (MQ=255)

                                                                             tCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAg               >  2:1885512/1‑91 (MQ=255)

                                                                             tCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAACTCAg               >  1:3289831/1‑91 (MQ=255)

                                                                              cTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGc              >  2:2347773/1‑91 (MQ=255)

                                                                              cTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGc              >  2:1667856/1‑91 (MQ=255)

                                                                               tATTGACTTTGACTTTTCATATCATGACAACATTCTAATTGTATTGTTTATTTATTTTTTGGCGTCTTCTTTTTCTGCTTTAAATTCTGCa             <  2:2370249/91‑1 (MQ=255)

                                                                                aTTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGCAt            >  1:1315169/1‑91 (MQ=255)

                                                                                   gactttgactttTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGCAtctt         <  2:1546204/91‑1 (MQ=255)

                                                                                     ctttgactttTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGCAtcttct       >  2:1373286/1‑91 (MQ=255)

                                                                                       ttgactttTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGCATCTTCTAc     <  2:1216363/91‑1 (MQ=255)

                                                                                          actttTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGCATCTTCTACAGt  >  1:2453284/1‑91 (MQ=255)

                                                                                          actttTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGCATCTTCTACAGt  <  1:3692369/91‑1 (MQ=255)

TCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGCCAATGTTCTATTGACTTTGACTTTTCAGATCATGACAACATTCTAATTGTATTGTTTAATTATTTTTTGTCGTCGTCTTTTACTTCTTTAAATTCAGCATCTTCTACAGT  >  USA300TCH1516_ALE/1689871‑1690051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.