| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1695186 | 204 (1.000) | 12 (0.070) | 4/142 | NT | 6.5% | intergenic (‑392/+138) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 |
| ? | USA300TCH1516_ALE | 1873591 = | 163 (0.900) | intergenic (‑267/+483) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
GTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1695090‑1695186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAAT > USA300TCH1516_ALE/1873591‑1873680 GTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGG < 2:2821234/91‑1GTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGG < 1:558166/91‑1 TAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG < 1:3412585/91‑1 TAGAATGTCTTTTCGAAATTCTCTATGTTGGGGCCCCAGCCCAACTTGCACATTATAGTAAGCTTACTGTTCGTCAGCTTCTGTGTTGGGG < 2:2241724/91‑1 AGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGC < 1:1030515/91‑1 AGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGC < 1:1029865/91‑1 AGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGC < 2:2006956/91‑1 AGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGC > 2:1473847/1‑91 AGAAGTGCTTTGCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGC < 2:536659/91‑1 GAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGCCTTTTCGTCAGCTTCTGCGTTGGGGCC > 2:3708091/1‑91 GAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCC < 1:1307086/91‑1 AATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCC < 2:994349/91‑1 AATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCC < 2:3198715/91‑1 AATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCC < 2:2958550/91‑1 AATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCC < 1:3099243/91‑1 ATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCC < 1:1916290/91‑1 TTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCA > 1:2613774/1‑91 TTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCA > 1:894156/1‑91 GGGCCCCACCCCAACTTGCACATTTTAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATT > 2:1264141/1‑91 GGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTC > 1:1263341/1‑91 GGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTC > 1:2931670/1‑91 CACCCCAACTTGCACATTATAGTAAGCTGCCTTCTCGTCAGCTTCTGTGTCGGGGCCCCAACATAGAGAATTTC‑GAAACGAAATTCTACAG > 2:3496704/1‑91 CACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAG > 1:2901225/1‑91 CACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAG > 1:743409/1‑91 CCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGgca > 1:2279848/1‑88 CCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGgca > 1:2916808/1‑88 ACATTATTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTG < 1:1851571/91‑1 CATTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTG < 1:1845889/91‑1 atcGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCGG < 1:3302876/88‑1 tcGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCGGG < 1:2633113/89‑1 cccgGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTA > 2:3811709/5‑91 cccgGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTA > 2:1707375/5‑91 GGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTT < 2:3400988/91‑1 GGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTT < 1:620476/91‑1 GGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTT > 1:3087630/1‑91 GGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTT < 2:2116182/91‑1 GGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGCGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTT > 1:1933604/1‑91 GGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTC < 1:2731802/91‑1 GGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTC < 1:1481764/91‑1 GGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTC < 1:2261284/91‑1 GGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTC < 1:2261258/91‑1 GCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 2:2776250/91‑1 GCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 1:2469430/91‑1 GCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 1:1329571/91‑1 GCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 2:2776231/91‑1 GCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 2:2544241/91‑1 GCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 2:2431419/91‑1 GCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 2:2399425/91‑1 GCCCCAACATAGAGAACTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCA < 1:2385859/91‑1 CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGCCAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTCAGCTTTCAA > 2:3525657/1‑91 CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAA > 2:2484108/1‑91 CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAA > 2:2231372/1‑91 CCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATACAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAA > 1:3419401/1‑91 CCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAAT > 1:1609897/1‑91 CCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAAT > 2:229138/1‑91 CCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTCGCTTACAATA > 2:3654306/1‑91 CCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATA > 1:2818656/1‑91 CCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATA > 1:2106921/1‑91 CCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTACAATA > 2:3654307/1‑91 CAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCATCATAGAAGCTGGCCAATAGTTAGCTTTCAATAA > 2:440699/1‑91 CAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA < 2:1870726/91‑1 CAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAA < 2:1870544/91‑1 AACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAAT > 2:2762238/1‑91 GTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1695090‑1695186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAAT > USA300TCH1516_ALE/1873591‑1873680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |