| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1695186 | 204 (1.000) | 12 (0.070) | 4/142 | NT | 6.5% | intergenic (‑392/+138) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 |
| ? | USA300TCH1516_ALE | 1873591 = | 163 (0.900) | intergenic (‑267/+483) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
Only 100 of 271 total aligned reads displayed.
TTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTT > USA300TCH1516_ALE/1695096‑1695275 | tCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAtt < 1:454173/91‑1 (MQ=255) cTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTg > 1:760501/1‑91 (MQ=255) ttttCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGt < 2:3868497/91‑1 (MQ=255) ttttCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGt > 1:640029/1‑91 (MQ=255) tCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTtat < 1:2500255/91‑1 (MQ=255) aagAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTtat > 1:934739/3‑91 (MQ=255) cGAAATTCTCTATGTTGGGTCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTtata < 2:340627/91‑1 (MQ=255) cGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTtata < 1:895487/91‑1 (MQ=255) aaTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGc < 1:1272653/91‑1 (MQ=255) aaTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGc < 1:2306268/91‑1 (MQ=255) aTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCt > 2:3184049/1‑91 (MQ=255) ttCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTc > 1:2963262/1‑91 (MQ=255) ttCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTc < 1:3286120/91‑1 (MQ=255) tctcTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCa > 1:1079588/1‑91 (MQ=255) tctcTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCa > 2:2207224/1‑91 (MQ=255) tctATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAtt < 1:217534/91‑1 (MQ=255) tctATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAtt < 2:475199/91‑1 (MQ=255) tctATGTTGGGGCCCCACCCCAACTTGCACAGTATAGTAAGCTGACTTTTCGTCAGCCTCTGTGTCGGGGCCCCATTGGTATAAGCTCAtt > 2:334876/1‑91 (MQ=21) ctATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAttt < 1:2632260/91‑1 (MQ=255) tATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAtttt < 2:2273923/91‑1 (MQ=255) tATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCAtttt > 1:3219734/1‑91 (MQ=255) aTGTTGGGGCCCCACCCCAACTTGCACATTATATTAAGCTGCCTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCTTCTTa > 1:3111911/1‑91 (MQ=18) aTGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGCCTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTa > 1:3426705/1‑91 (MQ=255) aTGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTa > 1:1071288/1‑91 (MQ=255) tGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAActc < 1:868635/91‑1 (MQ=255) tGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAActc < 1:858082/91‑1 (MQ=255) tGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAActc < 1:2410133/91‑1 (MQ=255) tGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAActc < 2:3380701/91‑1 (MQ=255) gggCCCCACCCCAACTTGCACATTTTAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAacatagagaatttcgaaaagaaatt > 2:1264141‑M1/1‑66 (MQ=255) gggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTg < 1:721303/91‑1 (MQ=255) gggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTg > 1:1297904/1‑91 (MQ=255) ggCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGt > 1:3126984/1‑91 (MQ=255) gCCCCACCCCAACTTGCCCGTTATAGTAAGCTGACTTATGGTCAGCTTCTGTGTTGGGGCCCCATTGTTGTAAGCTCATTTTAACTCTGTc < 2:167679/91‑1 (MQ=25) gCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTc > 2:808697/1‑91 (MQ=255) gCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTc < 2:703165/91‑1 (MQ=255) gCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTc > 1:2644373/1‑91 (MQ=255) cccaccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGa < 2:1109805/91‑1 (MQ=255) cccaccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTATGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGa > 1:3520508/1‑91 (MQ=255) ccaccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGAt > 1:950218/1‑91 (MQ=255) ccaccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGAt < 1:420153/91‑1 (MQ=255) caccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCAacatagagaatttcgaaaagaaattctacag > 1:2901225‑M1/1‑60 (MQ=255) caccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATg > 1:1477092/1‑91 (MQ=255) accccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATgg > 2:3552018/1‑91 (MQ=255) ccccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATCGc > 2:2836523/1‑91 (MQ=255) ccccaACTTCCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGc > 1:2590535/1‑91 (MQ=255) cccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCt > 2:512595/1‑91 (MQ=255) cccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCt > 1:1921739/1‑91 (MQ=255) cccaACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCt > 1:1562642/1‑91 (MQ=255) aCTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCa > 2:2963850/1‑91 (MQ=255) tGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata < 2:605858/91‑1 (MQ=255) tGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAata < 1:509221/91‑1 (MQ=255) acaTTATTGAAAGCTAACTATTGGCCAGCTTCTATGTTGGGGCCCCAacatagagaatttcgaaaagaaattctacagacaatgcaagttg < 1:1851571‑M1/91‑45 (MQ=255) acaTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATaa > 2:292840/1‑91 (MQ=255) caTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAAc > 2:2704702/1‑91 (MQ=255) aTTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACa < 2:700121/91‑1 (MQ=255) tataGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACAtt < 1:1203104/91‑1 (MQ=255) ataGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTg < 2:839923/91‑1 (MQ=255) ataGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTg < 1:2791150/91‑1 (MQ=255) taGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGt < 1:462672/91‑1 (MQ=255) gTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTaa > 2:1683397/1‑91 (MQ=255) cTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGccc < 1:1771200/91‑1 (MQ=255) gACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAg > 1:364034/1‑91 (MQ=255) gACTTTTAGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAg < 1:1966099/91‑1 (MQ=255) cTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGa > 1:2065077/1‑91 (MQ=255) cTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGa > 2:3005222/1‑91 (MQ=255) tttCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTCAAGCCCAGGACg < 1:3033396/91‑1 (MQ=255) tttCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACg > 2:1934866/1‑91 (MQ=255) tCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGtt < 1:3448443/91‑1 (MQ=255) cGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTa > 2:1749491/1‑91 (MQ=255) tCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAt > 2:1335088/1‑91 (MQ=255) tCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAt < 2:1511714/91‑1 (MQ=255) cAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAtt > 2:3227592/1‑91 (MQ=255) cAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAtt < 2:3610426/91‑1 (MQ=255) aGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAAttt > 1:3346007/1‑91 (MQ=255) tCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATcc > 1:609084/1‑91 (MQ=255) cTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCGATATAACATGGTAAAGCCCAGGACGTTAATTTATCCt < 2:3474881/91‑1 (MQ=255) tgtgTTGGGGCCCCATGGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTa < 2:3784147/91‑1 (MQ=255) gtgtTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAg > 1:3713096/1‑91 (MQ=255) tgtTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAgg < 1:2736998/91‑1 (MQ=255) ttGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCt > 2:2501265/1‑91 (MQ=255) ttGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCt < 1:1756028/91‑1 (MQ=255) ggggCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTcc < 1:2136606/91‑1 (MQ=255) ggggCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTcc > 1:140728/1‑91 (MQ=255) ggggCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTcc < 1:3832791/91‑1 (MQ=255) gggCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTccc < 1:2046037/91‑1 (MQ=255) ggCCCCAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttc < 1:2261258‑M1/91‑85 (MQ=255) ggCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCct < 1:2038670/91‑1 (MQ=255) gCCCCAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttca < 2:2399425‑M1/91‑86 (MQ=255) gCCCCAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttca < 2:2776231‑M1/91‑86 (MQ=255) gCCCCAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttca < 2:2544241‑M1/91‑86 (MQ=255) gCCCCAacatagagaacttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttca < 1:2385859‑M1/91‑86 (MQ=255) ccccAacatagagaatttcgaaaagaaattctacagccaatgcaagttggcggggccccaacatagaagctggccaatagtcagctttcaa > 2:3525657‑M1/1‑5 (MQ=255) ccccAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttcaa > 2:2484108‑M1/1‑5 (MQ=255) ccccAacatagagaatttcgaaaagaaattctacagacaatacaagttggcggggccccaacatagaagctggccaatagttagctttcaa > 1:3419401‑M1/1‑5 (MQ=255) cccAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttcaat > 2:229138‑M1/1‑4 (MQ=255) cccATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCtt < 1:2778966/91‑1 (MQ=255) ccAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagcttacaata > 2:3654307‑M1/1‑3 (MQ=255) ccATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCttt < 2:1243420/91‑1 (MQ=255) cAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccatcatagaagctggccaatagttagctttcaataa > 2:440699‑M1/1‑2 (MQ=255) cAacatagagaatttcgaaaagaaattctacagacaatgcaagttggcggggccccaacatagaagctggccaatagttagctttcaataa < 2:1870544‑M1/91‑90 (MQ=255) | TTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCCATTGTTATAAGCTCATTTTAACTCTGTCGATGGCTGCCAATATAACATTGTAAAGCCCAGGACGTTAATTTATCCTAGGCTCCCTCTTTT > USA300TCH1516_ALE/1695096‑1695275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |