| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1695186 | 204 (1.000) | 12 (0.070) | 4/142 | NT | 6.5% | intergenic (‑392/+138) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 |
| ? | USA300TCH1516_ALE | 1873591 = | 163 (0.900) | intergenic (‑267/+483) | USA300HOU_RS09300/USA300HOU_RS09305 | Putative dipeptidase/hypothetical protein | |||||
Only 100 of 241 total aligned reads displayed.
TTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATG > USA300TCH1516_ALE/1873501‑1873681 | ttCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCaa < 1:1713111/91‑1 (MQ=255) cAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACa > 1:1073009/1‑91 (MQ=255) cAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATAATGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACa > 2:3540435/1‑91 (MQ=255) aaGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACAt < 1:936361/91‑1 (MQ=255) aaGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACAt < 1:3571771/91‑1 (MQ=255) agagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATa < 1:3307982/91‑1 (MQ=255) agagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATa > 1:249310/1‑91 (MQ=255) agagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATa < 1:3960466/91‑1 (MQ=255) agagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATa > 2:3103707/1‑91 (MQ=255) agagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATa < 2:754517/91‑1 (MQ=255) gagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATag < 1:3488863/91‑1 (MQ=255) gagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATag < 2:1635934/91‑1 (MQ=255) gagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATag < 1:2001652/91‑1 (MQ=255) gagCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATag > 1:2123230/1‑91 (MQ=255) agCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATaga > 1:2964714/1‑91 (MQ=255) agCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATaga > 2:496677/1‑91 (MQ=255) agCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATaga > 2:1730944/1‑91 (MQ=255) tcTCGTGATATAAGTCAATGTACTAGGCACACAATTTATTATTGACAGTAGTTAACCGAGCGAAAATGCGCCCTGGGGCTCCAACATagag < 2:2682002/90‑1 (MQ=255) gCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATagag < 1:688473/91‑1 (MQ=255) gCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATagag > 2:1702392/1‑91 (MQ=255) gCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATagag < 1:2356585/91‑1 (MQ=255) tCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGaa > 1:891607/1‑91 (MQ=255) tCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGaa > 2:1572521/1‑91 (MQ=255) tCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGaa > 2:1264700/1‑91 (MQ=255) cGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAAt > 2:3577955/1‑91 (MQ=255) agaTATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAAttt > 1:2794574/1‑91 (MQ=255) gaTATAAGTCAATGTACTAGGCACACAATTTAATATTGACCGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTc > 2:896330/1‑91 (MQ=255) ataAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑Gaa > 1:2433180/1‑91 (MQ=255) taAGTCAATGTACTAGGCACACCACTTACTCTTGACAGTCATTAACCGACCGAAAACGCGCCCCGGGGCCCCAACACAGAGAATTTC‑Gaaa > 2:1250155/1‑91 (MQ=25) taAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑Gaaa > 1:2170541/1‑91 (MQ=255) taAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACAGAGAGAATTTC‑Gaaa > 2:1348591/1‑91 (MQ=255) aGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAg < 2:2772403/91‑1 (MQ=255) gTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGa > 2:240702/1‑91 (MQ=255) gTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGa > 1:1562990/1‑91 (MQ=255) aaTGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAAt < 1:1040073/91‑1 (MQ=255) aaTGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAAt < 2:1895195/91‑1 (MQ=255) aTGGACTAGGCACACGATTTAATATTGACAGTAATTAACTGAACGAATATGCGCCCCGGGGCCCCAACATAGAGAGTTTC‑GAAAAGAAAtt < 1:1418089/91‑1 (MQ=37) tGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTc > 2:302304/1‑91 (MQ=255) tGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTc > 1:3892377/1‑91 (MQ=255) tGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTc > 1:3762627/1‑91 (MQ=255) ggccccaccccaacttgcacattatagtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTC‑GAAAAGAAATTc > 1:1263341‑M2/66‑91 (MQ=255) aCTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTAc < 2:1321433/91‑1 (MQ=255) aCTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTAc > 1:3640355/1‑91 (MQ=255) cTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACa > 2:3498355/1‑91 (MQ=255) cTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACa > 2:367141/1‑91 (MQ=255) tAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAg < 2:1092533/91‑1 (MQ=255) caccccaacttgcacattatagtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAg > 1:743409‑M2/61‑91 (MQ=255) cccaacttgcacattatagtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTC‑GAAAAGAAATTCTacaggca > 1:2916808‑M2/58‑88 (MQ=255) aaTTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCaa > 1:1914449/1‑91 (MQ=255) aTTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAg > 2:2379886/1‑91 (MQ=255) tttAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGt < 1:2644593/91‑1 (MQ=255) tttAATATGGACAGTAATTAAGCGAACGAAAATGCGCCCCGGGGCCCCAACATAGGGAGTTTC‑GAAAAGAAAGTCTACAGACAGTGCAAGt < 2:1420968/91‑1 (MQ=25) ttAATATTGACAATAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGtt > 1:3050282/1‑91 (MQ=255) aaTATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTgg > 1:3525393/1‑91 (MQ=255) tatTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCg < 1:1848558/91‑1 (MQ=255) attgaaagctaactgttggccagcttctatgttGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCggg > 1:1002135‑M1/34‑91 (MQ=255) tcgtaagctgacttttcgtcagcttctgtgttggggccccaACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCAGGTTGGCggg < 1:2633113‑M2/50‑1 (MQ=255) gACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGc < 2:3212840/91‑1 (MQ=255) aCAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGcc < 1:1353608/91‑1 (MQ=255) aCAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGcc < 1:1326822/91‑1 (MQ=255) cAGTGATTAACCGAGCGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAAGTCTACGGACAATGCAAGTTGGCGGGGccc < 2:334728/91‑1 (MQ=21) cAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGccc < 1:373973/91‑1 (MQ=255) cAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGccc < 1:1249394/91‑1 (MQ=255) cAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGccc > 1:1660391/1‑91 (MQ=255) gTAATTAACCGAACGAAAATGTGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCa < 1:2845057/91‑1 (MQ=255) gTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTATAGACAATGCAAGTTGGCGGGGCCCCa < 2:2239982/91‑1 (MQ=255) tAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCaa < 2:601991/91‑1 (MQ=255) aaTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAAc > 1:2882545/1‑91 (MQ=255) aTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACa > 1:618980/1‑91 (MQ=255) aTTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACa > 1:75043/1‑91 (MQ=255) tAACCGAACGAAAATTCGCCCCGGGGGCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATa < 2:3421775/91‑1 (MQ=255) tAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATa > 2:2926406/1‑91 (MQ=255) tAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATa > 2:2730380/1‑91 (MQ=255) tAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATa < 2:3962703/91‑1 (MQ=255) aaCCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAg > 1:231199/1‑91 (MQ=255) ccGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GCAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGaa > 2:3049529/1‑91 (MQ=255) gaacgaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGc < 1:764573/91‑1 (MQ=255) gaacgaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGc < 1:844674/91‑1 (MQ=255) cgaaAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTgg < 1:1892164/91‑1 (MQ=255) aaTGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGCAATTCTACAGACAATGCCAGTTGGCGGGGCCCCAACATAGAAGCTGGCCaa > 1:3242737/1‑91 (MQ=255) aTGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAAt < 2:2213581/91‑1 (MQ=255) gcgcCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAg < 1:567156/91‑1 (MQ=255) cgcCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGt > 2:523080/1‑91 (MQ=255) ccccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTa > 1:1798983/1‑91 (MQ=255) ccccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTa > 2:3717887/1‑91 (MQ=255) ccccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTa > 2:1129139/1‑91 (MQ=255) ccccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTa > 1:386932/1‑91 (MQ=255) ccGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGc < 2:686132/91‑1 (MQ=255) ggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTc < 1:1481764‑M2/84‑1 (MQ=255) ggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTc < 1:2261258‑M2/84‑1 (MQ=255) ggccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTc < 1:2731802‑M2/84‑1 (MQ=255) gccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCa < 2:2776250‑M2/85‑1 (MQ=255) gccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCa < 2:2544241‑M2/85‑1 (MQ=255) gccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCa < 2:2431419‑M2/85‑1 (MQ=255) ccccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATACAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCaa > 1:3419401‑M2/6‑91 (MQ=255) cccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCaat > 1:1609897‑M2/5‑91 (MQ=255) cccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCaat > 2:229138‑M2/5‑91 (MQ=255) ccaACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCaata > 1:2106921‑M2/4‑91 (MQ=255) caACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCaataa < 2:1870544‑M2/89‑1 (MQ=255) aCATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAAtg < 2:2335450/91‑1 (MQ=255) | TTCAAGAGCTCGAGATATAAGTCAATGTACTAGGCACACAATTTAATATTGACAGTAATTAACCGAACGAAAATGCGCCCCGGGGCCCCAACATAGAGAATTTC‑GAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATG > USA300TCH1516_ALE/1873501‑1873681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |