| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1702257 = | 169 (0.830) | 17 (0.100) | 10/138 | NT | 10.4% | intergenic (‑1/+48) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase |
| ? | USA300TCH1516_ALE | 1702302 = | 148 (0.840) | intergenic (‑46/+3) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase | |||||
TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1702357‑1702257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > USA300TCH1516_ALE/1702302‑1702391 TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGG < 1:2683926/91‑1TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGG > 2:3575087/1‑91TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGG < 1:2105583/91‑1TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGG > 2:3575213/1‑91 AGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAACGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGc > 2:2417494/1‑90 AGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGA > 2:2686742/1‑91 AGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGA < 1:2192326/91‑1 AGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGA > 2:2417482/1‑91 AGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGA < 1:724136/91‑1 AGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGA > 2:2417508/1‑91 GATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAG > 1:2881003/1‑91 GATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAG > 2:381757/1‑91 GATGAACATAATGAAGATGCAGAAAGATTGTCTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCACAGACGTGTATCAAGTTGAGGAG > 2:3015545/1‑91 ATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGT < 1:3529408/91‑1 ATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGT > 1:982716/1‑91 GAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGG > 2:552833/1‑91 GAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGG < 1:315545/91‑1 GAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGG < 1:1028110/91‑1 GAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGG < 1:1028224/91‑1 AACATAATGAAGATGCAGAAAGATTGTTTTTTATTTCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGT > 2:3367556/1‑91 AACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGT > 2:1665321/1‑91 ACATAATGAAGATGCAGACAGATTGTTTTTCATTGCGAAAAAAAAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTT > 2:3295720/1‑91 ACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTT > 1:1517762/1‑91 ATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATGAAGTTGAGGAGTGGTTTT > 1:2192662/1‑91 CATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAA < 1:2798679/91‑1 CATGGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAA < 1:2798753/91‑1 AAATAAAAGTAACACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCAGCA > 1:3057857/1‑91 AAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCA > 2:2128368/1‑91 AAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATG > 1:1754305/1‑91 AACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGT > 1:40302/1‑91 CCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTC > 1:1806208/1‑91 CACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCA > 2:41959/1‑91 CACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCA > 1:1642249/1‑91 CACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCA > 2:2411837/1‑91 CTCGCTCAGACGTGTATAAAGTTGAGGAGTGGCTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATC > 2:1527927/1‑91 GCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCCTCTTCATTATGTTCATCTAT > 1:3650859/1‑91 GCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTAT > 1:1929492/1‑91 GCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTAT > 2:1828211/1‑91 TCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATAT > 2:3648208/1‑91 CAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATT > 1:135627/1‑91 CAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATT > 2:1733636/1‑91 GAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAA > 1:735312/1‑91 AGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAAC > 2:3341818/1‑91 AGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAAC > 2:712200/1‑91 AGTGGTTTTACTTTTATTTTTTCGCAATAAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAAC > 2:140607/1‑91 GTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACA < 2:555696/91‑1 GTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACA < 2:3704733/91‑1 TGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACAT < 2:2565316/91‑1 GGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCCTCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATG > 2:3055444/1‑91 GGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATG < 1:1665030/91‑1 GGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATG < 2:478014/91‑1 GGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATG < 1:1673778/91‑1 GGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATG < 1:2545458/91‑1 GTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGT < 1:1086152/91‑1 GTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGT > 1:997993/1‑91 GTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGT > 2:2447407/1‑91 GTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAATATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGT > 2:3478084/1‑91 TTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTT < 2:2005148/91‑1 TTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTT < 1:2686500/91‑1 TTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTT > 2:3338120/1‑91 TTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTT < 1:3314602/91‑1 TTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTT < 1:2264444/91‑1 TTTACTTCTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTT < 1:1973783/91‑1 TTTACTTCTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTT < 1:1974585/91‑1 TTACTTTTATTTTTTCGCACTGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTA > 2:3461334/1‑91 TTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTA > 1:1894818/1‑91 TACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGTATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAA > 2:481149/1‑91 TACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAA < 2:1126635/91‑1 TACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAA < 2:1127420/91‑1 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTGTGCATCTTCATTCTGTTCATCTATAGTCAAATCAGTAAATGTTTCAACATGTTTAAA > 1:3161118/1‑91 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > 1:3124589/1‑91 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA < 2:3752291/91‑1 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > 1:2677265/1‑91 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > 2:495935/1‑91 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > 1:3124681/1‑91 TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1702357‑1702257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > USA300TCH1516_ALE/1702302‑1702391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |