| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1702257 = | 169 (0.830) | 17 (0.100) | 10/138 | NT | 10.4% | intergenic (‑1/+48) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase |
| ? | USA300TCH1516_ALE | 1702302 = | 148 (0.840) | intergenic (‑46/+3) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase | |||||
Only 100 of 295 total aligned reads displayed.
AATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTA > USA300TCH1516_ALE/1702167‑1702347 | tttaaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagt > 1:3124589‑M1/91‑91 (MQ=255)tttaaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagt < 2:3752291‑M1/1‑1 (MQ=255)tttaaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagt > 2:495935‑M1/91‑91 (MQ=255) ttaaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTa < 2:1127420‑M1/2‑1 (MQ=255) aTTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATA < 2:3821428‑M1/91‑1 (MQ=255) taaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTaa > 1:1894818‑M1/89‑91 (MQ=255) taaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcagtgcgaaaaaataaaagTaa > 2:3461334‑M1/89‑91 (MQ=255) tAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAA > 1:2636191‑M1/1‑91 (MQ=255) aaacatgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaatagaagTaaa < 1:1974585‑M1/4‑1 (MQ=255) tACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACC < 1:3881440‑M1/91‑1 (MQ=255) catgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAAcc < 1:1665030‑M1/7‑1 (MQ=255) catgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAAcc < 1:2545458‑M1/7‑1 (MQ=255) catgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAAcc < 2:478014‑M1/7‑1 (MQ=255) catgttgaaacatttactgattttaatatagatgaacataatgaagaggcagaaagattgtttttcattgcgaaaaaataaaagTAAAAcc > 2:3055444‑M1/85‑91 (MQ=255) atgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCa < 2:2565316‑M1/8‑1 (MQ=255) aCCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCA < 1:2529373‑M1/91‑1 (MQ=255) tgttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCAc < 2:555696‑M1/9‑1 (MQ=255) ccATAATTAAAACAACAGCACTTAGAATACATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCAC < 1:3170103‑M1/91‑1 (MQ=255) gttgaaacatttactgattttaatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCAct > 2:3341818‑M1/82‑91 (MQ=255) cATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACT > 2:1165543‑M1/1‑91 (MQ=255) cATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACT > 1:3605099‑M1/1‑91 (MQ=255) aTTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCActcctc < 1:2836395/91‑1 (MQ=255) aaaaCAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAAc < 1:1515223/91‑1 (MQ=255) aaaCAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACt > 1:1092361/1‑91 (MQ=255) aacaacAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACtt > 1:3794174/1‑91 (MQ=255) aacaacAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACtt > 1:1057993/1‑91 (MQ=255) aacaacACATAGAACAGATAACTTCCATTGAGTTAAAAAATCTTCATAGCGTAATAAAAACTGATACAATAAACCCACTCCTCAACTTtat < 2:2616628/91‑1 (MQ=255) caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATac > 1:3811749/1‑91 (MQ=255) caGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATac > 1:3940475/1‑91 (MQ=255) aGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATaca < 1:154348/91‑1 (MQ=255) aGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATaca < 2:2282293/91‑1 (MQ=255) cACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACg < 2:3155925/91‑1 (MQ=255) aCTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGt < 1:421420/91‑1 (MQ=255) aCTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGt > 1:8826/1‑91 (MQ=255) aCTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGt > 1:3461503/1‑91 (MQ=255) cTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTc > 2:1636657/1‑91 (MQ=255) cTTAGAATATATAACTTCCATTGAGTTAAAAAAGCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTc < 1:3235285/91‑1 (MQ=255) ttAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCt < 2:2432175/91‑1 (MQ=255) tAGAATATATAACTTCCATTGAGTTGAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTg < 1:3677552/91‑1 (MQ=255) aatatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTg > 2:1733636‑M1/61‑91 (MQ=255) ggAATATATAACTTCCAGTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGa < 2:2214303/90‑1 (MQ=255) atatagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGa > 2:3648208‑M1/60‑91 (MQ=255) aGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGa < 2:3579468/91‑1 (MQ=255) aGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGa < 2:1098659/91‑1 (MQ=255) atagatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGc > 2:1828211‑M1/58‑91 (MQ=255) aaTATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgag < 1:998809‑M1/91‑24 (MQ=255) atatatAACTTCCACTGAATTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCGTTCgctcagacgcgtataaagttgagg < 2:2249286‑M1/91‑25 (MQ=255) tatataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgagga < 1:6621‑M1/91‑26 (MQ=255) tatataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgagga < 2:1931955‑M1/91‑26 (MQ=255) gatgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAGCCACTCCTCAACTTTATACACGTCTGAGCGAg > 2:1527927‑M1/55‑91 (MQ=255) atataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgag > 1:727485‑M2/1‑88 (MQ=255) tataACTTCCATTGAGTTAACAAATCTTGATAGCACAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggagt < 2:1699749‑M1/91‑28 (MQ=255) tgaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTg > 2:41959‑M1/53‑91 (MQ=255) ataACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtg > 2:362542‑M2/1‑86 (MQ=255) taACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtgg < 1:2293400‑M2/91‑7 (MQ=255) gaacataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTgg > 1:1806208‑M1/52‑91 (MQ=255) aaCTACCAATGCGCTAAAAAATCTTTATAGCGTAATAAAAAATGCTACAATAAAACCACTTCTCAACTTTATACACTACTGAGCGAGTGGt > 2:99108/1‑91 (MQ=255) aCTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtggtt > 1:2484361‑M2/1‑83 (MQ=255) cataatgaagatgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGttt > 1:1754305‑M1/49‑91 (MQ=255) cTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCgctcagacgtgtataaagttgaggagtggttt < 1:1402867‑M1/91‑33 (MQ=255) cTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCgagtggttt < 2:251‑M2/91‑10 (MQ=255) aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtt > 2:2013324/1‑91 (MQ=255) ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt < 1:392959/91‑1 (MQ=255) ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt < 1:1768064/91‑1 (MQ=255) tGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtttt > 1:3100878/1‑91 (MQ=255) gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt < 2:2653685/91‑1 (MQ=255) gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt > 2:3195212/1‑91 (MQ=255) ttAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAGCTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAttt < 2:3121809/91‑1 (MQ=255) tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttt < 2:2043685/91‑1 (MQ=255) aaaaaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAttttt > 2:79500/1‑91 (MQ=255) aTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa < 1:1081676/91‑1 (MQ=255) cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt > 1:1381969/1‑91 (MQ=255) ttgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATg < 1:2798679‑M1/64‑1 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa > 2:2415584/1‑91 (MQ=255) tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCCGACCGAGTGGTTTTACTTTTCTTTTTTCGCCATGaa > 2:1283957/1‑91 (MQ=255) ataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGCGGTTTTACTTTTATTTTTTCGCAATGaaa > 2:2729871/1‑91 (MQ=255) gCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAAc > 1:638843/1‑91 (MQ=255) gTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACaa > 1:2179802/1‑91 (MQ=255) ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt > 1:810239/1‑91 (MQ=255) taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt < 1:1298283/91‑1 (MQ=255) taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt > 1:693221/1‑91 (MQ=255) taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt < 1:2267846/91‑1 (MQ=255) aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc < 2:2176232/91‑1 (MQ=255) aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc > 2:2462398/1‑91 (MQ=255) aaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCt < 2:1917802/91‑1 (MQ=255) aaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCt < 2:60852/91‑1 (MQ=255) atcgATACAATAGAACCTCTCCTCATCTTTAGACTCATCTGGGCGAGTGGTTTTACGTTTATTGTTTCGCAATGAAAAACAATCTTTCGGc < 2:3421792/88‑1 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATGCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc < 1:3360977/91‑1 (MQ=255) aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc < 1:322692/91‑1 (MQ=255) ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCa > 2:820415/1‑91 (MQ=255) gATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATc > 2:2381944/1‑91 (MQ=255) aTACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCt > 1:1223321/1‑91 (MQ=255) tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCtt > 1:501172/1‑91 (MQ=255) tACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCtt < 2:2874883/91‑1 (MQ=255) aaTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAt < 1:1439662/91‑1 (MQ=255) aaTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAt < 2:719348/91‑1 (MQ=255) aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt < 1:1935559/91‑1 (MQ=255) aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt < 1:2706577/91‑1 (MQ=255) aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt < 2:1863682/91‑1 (MQ=255) tAAAACCACTCgctcagacgtgtataaagttgaggagtggttttattgtatcaatttttattacgctataaagattttttaactcaatgga < 2:1074558‑M1/91‑81 (MQ=255) | AATTAATACCATAATTAAAACAACAGCACTTAGAATATATAACTTCCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTA > USA300TCH1516_ALE/1702167‑1702347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |