BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1702257 =	169 (0.830)	17 (0.100)	10/138	NT	10.4%	intergenic (‑1/+48)	comEA/tylM1	ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase
*	?	USA300TCH1516_ALE	1702302 =	148 (0.840)	17 (0.100)	10/138	NT	10.4%	intergenic (‑46/+3)	comEA/tylM1	ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase

Only 100 of 265 total aligned reads displayed.

CCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAA  >  USA300TCH1516_ALE/1702212‑1702392

  aTTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtt                                                                                          >  2:2013324/1‑91 (MQ=255)

   ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCGCTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                                                                         <  1:393432/91‑1 (MQ=255)

   ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                                                                         <  1:2552696/91‑1 (MQ=255)

   ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                                                                         >  2:2670599/1‑91 (MQ=255)

   ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                                                                         <  1:1768064/91‑1 (MQ=255)

   ttGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACttt                                                                                         <  2:1961123/91‑1 (MQ=255)

    tGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACtttt                                                                                        <  1:1756488/91‑1 (MQ=255)

       gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt                                                                                     >  2:3195212/1‑91 (MQ=255)

       gTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt                                                                                     >  1:1398503/1‑91 (MQ=255)

       gTTAAAAAATCTTAATAGCGTAATATAAATTGATACAATAAAACTACACCTTAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtt                                                                                     >  2:1630363/1‑91 (MQ=255)

        ttAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAttt                                                                                    <  2:1891157/91‑1 (MQ=255)

        tgcagaaagattgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAttt                                                                                    >  2:2128368‑M1/38‑91 (MQ=255)

         tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttt                                                                                   <  2:2043685/91‑1 (MQ=255)

         tAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTAtttt                                                                                   <  2:2626930/91‑1 (MQ=255)

             aaaTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCg                                                                               <  1:1940863/91‑1 (MQ=255)

               aTCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCa                                                                             >  2:3090499/1‑91 (MQ=255)

                 cTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAAt                                                                           >  1:1381969/1‑91 (MQ=255)

                  ttgtttttcattgcgaaaaaataaaagTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATg                                                                          <  1:2798679‑M1/64‑1 (MQ=255)

                    tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaa                                                                        >  2:2415584/1‑91 (MQ=255)

                    tataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCCGACCGAGTGGTTTTACTTTTCTTTTTTCGCCATGaa                                                                        >  2:1283957/1‑91 (MQ=255)

                     ataGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaa                                                                       <  2:256525/91‑1 (MQ=255)

                       aGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGaaaaa                                                                     >  2:170578/1‑91 (MQ=255)

                        gCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAAc                                                                    <  2:1157734/91‑1 (MQ=255)

                          catggcgaaaaaataaaagtaaaaccactcgctcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACaa                                                                  <  1:2798753‑M2/27‑1 (MQ=255)

                           taataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAAt                                                                 >  1:3914078/1‑91 (MQ=255)

                             ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt                                                               >  1:810239/1‑91 (MQ=255)

                             ataaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCt                                                               <  2:3862286/91‑1 (MQ=255)

                              taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt                                                              <  1:2267846/91‑1 (MQ=255)

                              taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt                                                              <  1:1298283/91‑1 (MQ=255)

                              taaAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCtt                                                              >  1:693221/1‑91 (MQ=255)

                               aaaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCttt                                                             <  2:1003701/91‑1 (MQ=255)

                                aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc                                                            >  2:2462398/1‑91 (MQ=255)

                                aaaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTc                                                            <  2:2176232/91‑1 (MQ=255)

                                 aaaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCt                                                           <  2:60852/91‑1 (MQ=255)

                                  aaTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTCTTACTTTTATTTTTTCGCACTGAAAAACAATCTTTCTg                                                          >  2:474409/1‑91 (MQ=255)

                                   atcgATACAATAGAACCTCTCCTCATCTTTAGACTCATCTGGGCGAGTGGTTTTACGTTTATTGTTTCGCAATGAAAAACAATCTTTCGGc                                                         <  2:3421792/88‑1 (MQ=255)

                                   aTTGATACAATAAAACCACTCCTCAACTTTATGCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                         <  1:3360977/91‑1 (MQ=255)

                                   aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                         <  1:322692/91‑1 (MQ=255)

                                   aTTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGc                                                         >  1:3787510/1‑91 (MQ=255)

                                    ttGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCa                                                        >  2:820415/1‑91 (MQ=255)

                                    aaataaaagtaacaccactcgctcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCAGCa                                                        >  1:3057857‑M2/55‑91 (MQ=255)

                                     tGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCAt                                                       <  1:653197/91‑1 (MQ=255)

                                      gATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATc                                                      >  2:2421471/1‑91 (MQ=255)

                                         aCAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc                                                   >  2:1845052/1‑91 (MQ=255)

                                         aCAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTc                                                   <  1:1186114/91‑1 (MQ=255)

                                           aaTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAt                                                 <  1:1883172/91‑1 (MQ=255)

                                            aTAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAtt                                                <  1:2707263/91‑1 (MQ=255)

                                              AAAACCACTCCTCAACTTCATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTAt                                              >  1:2192662‑M1/1‑91 (MQ=255)

                                                aaccactcgctcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGt                                            >  1:40302‑M2/43‑91 (MQ=255)

                                                AACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTTTTTTTTCGCAATGAAAAACAATCTGTCTGCATCTTCATTATGt                                            >  2:3295720‑M1/1‑91 (MQ=255)

                                                AACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGt                                            >  1:1517762‑M1/1‑91 (MQ=255)

                                                 ACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGAAATAAAAAACAATCTTTCTGCATCTTCATTATGtt                                           >  2:3367556‑M1/1‑91 (MQ=255)

                                                  ccactcgctcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTc                                          >  1:1806208‑M2/41‑91 (MQ=255)

                                                  CCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTc                                          >  2:552833‑M1/1‑91 (MQ=255)

                                                  CCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTc                                          <  1:1028224‑M1/91‑1 (MQ=255)

                                                   cactcgctcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCa                                         >  2:2411837‑M2/40‑91 (MQ=255)

                                                     gtcctcATATCTATACACGTATGTGCGTGTGGATCTACTTCTATTTTTTCGCAATGAAAAACAAACAATCGGCATCTTCATTATGTTCATc                                       <  2:2700763/90‑1 (MQ=255)

                                                      gCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACGTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                      >  2:2417494‑M1/2‑91 (MQ=255)

                                                      TCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCt                                      <  1:724136‑M1/91‑1 (MQ=255)

                                                       CCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTa                                     <  1:2683926‑M1/91‑1 (MQ=255)

                                                       CCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTa                                     >  2:3575213‑M1/1‑91 (MQ=255)

                                                         tcAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata                                   >  1:2179083/1‑91 (MQ=255)

                                                         tcAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata                                   >  1:479823/1‑91 (MQ=255)

                                                         tcAACTTTATACACGTCTGAGCGAGTGGTTGTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCtata                                   <  2:1475653/91‑1 (MQ=255)

                                                          tcagacgtgtataaagttgaggagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat                                  >  2:3648208‑M2/33‑91 (MQ=255)

                                                          cAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTatat                                  <  1:3773147/91‑1 (MQ=255)

                                                           aaCTGTATACACGTCTGAGCGAGTGGTTTTACTGTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATAtt                                 <  2:3757333/91‑1 (MQ=255)

                                                            aCTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTa                                <  1:1909015/91‑1 (MQ=255)

                                                              tttATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaaa                              >  1:573549/1‑91 (MQ=255)

                                                              tttATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaaa                              <  2:3756157/91‑1 (MQ=255)

                                                               ttATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTaaaa                             >  2:3508142/1‑91 (MQ=255)

                                                                 ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATc                           >  2:3622957/1‑91 (MQ=255)

                                                                 ataCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTACATCTATATTAAAATc                           >  2:3038176/1‑91 (MQ=255)

                                                                  taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCa                          >  2:1528553/1‑91 (MQ=255)

                                                                  taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCa                          >  1:1007811/1‑91 (MQ=255)

                                                                  taCACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCa                          >  1:3118715/1‑91 (MQ=255)

                                                                   acacGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAg                         <  2:3449989/91‑1 (MQ=255)

                                                                     acGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTa                       <  1:2588545/91‑1 (MQ=255)

                                                                      cGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaa                      <  1:1094026/91‑1 (MQ=255)

                                                                      cGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTaa                      >  2:2565911/1‑91 (MQ=255)

                                                                        tCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAAt                    <  2:2907006/91‑1 (MQ=255)

                                                                        tCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAAt                    >  2:185781/1‑91 (MQ=255)

                                                                          tGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGt                  <  1:1636657/91‑1 (MQ=255)

                                                                            aGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                >  1:3496720/1‑91 (MQ=255)

                                                                            aGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                <  1:1431765/91‑1 (MQ=255)

                                                                            aGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGttt                <  1:3613941/91‑1 (MQ=255)

                                                                             gCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc               <  1:2982347/91‑1 (MQ=255)

                                                                             gCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTc               <  2:295370/91‑1 (MQ=255)

                                                                              cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa              <  2:2325981/91‑1 (MQ=255)

                                                                              cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa              >  2:3704678/1‑91 (MQ=255)

                                                                              cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa              >  1:3138006/1‑91 (MQ=255)

                                                                              cGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCa              >  1:2447413/1‑91 (MQ=255)

                                                                                agtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAAc            >  2:712200‑M2/11‑91 (MQ=255)

                                                                                   ggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATg         <  1:1673778‑M2/84‑1 (MQ=255)

                                                                                    gttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGt        >  1:997993‑M2/7‑91 (MQ=255)

                                                                                    gttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCAATATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGt        >  2:3478084‑M2/7‑91 (MQ=255)

                                                                                      tttaCTTCTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGttt      <  1:1974585‑M2/87‑1 (MQ=255)

                                                                                        taCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGTATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaa    >  2:481149‑M2/3‑91 (MQ=255)

                                                                                        taCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTaa    <  2:1126635‑M2/89‑1 (MQ=255)

                                                                                         aCTTTTATTTTTTCGCAATGAAAAACAATCTTTGTGCATCTTCATTCTGTTCATCTATAGTCAAATCAGTAAATGTTTCAACATGTTTaaa   >  1:3161118‑M2/2‑91 (MQ=255)

CCATTGAGTTAAAAAATCTTTATAGCGTAATAAAAATTGATACAATAAAACCACTCCTCAACTTTATACACGTCTGAGCGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAAA  >  USA300TCH1516_ALE/1702212‑1702392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.