BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1708649	214 (1.050)	12 (0.070)	6/132	NT	6.2%	intergenic (+94/+108)	USA300HOU_RS08530/entA_3	hypothetical protein/Enterotoxin type A
*	?	USA300TCH1516_ALE	= 1708670	189 (1.130)	12 (0.070)	6/132	NT	6.2%	intergenic (+115/+87)	USA300HOU_RS08530/entA_3	hypothetical protein/Enterotoxin type A

Only 100 of 108 total aligned reads displayed.

TTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1708546‑1708649

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacagcagtaagGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGATTA  <  USA300TCH1516_ALE/1708670‑1708581

TTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGA                                                                                                         <  1:2537164/91‑1

TTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGA                                                                                                         <  2:2619199/91‑1

 TTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAA                                                                                                        <  2:3176690/91‑1

 TTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAA                                                                                                        >  2:1158938/1‑91

  TACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAA                                                                                                       >  2:2835539/1‑91

  TACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAA                                                                                                       >  2:1928541/1‑91

  TACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAA                                                                                                       >  1:3108330/1‑91

   ACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAA                                                                                                      >  1:3118792/1‑91

   ACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAA                                                                                                      >  1:219757/1‑91

   ACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAA                                                                                                      <  1:2349816/91‑1

    CTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATTATTCTAATAGAAAAC                                                                                                     >  2:2571680/1‑91

    CTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAAC                                                                                                     >  2:2572231/1‑91

    CTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAAC                                                                                                     >  1:73301/1‑91

     TATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACA                                                                                                    <  2:2314388/91‑1

      ATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAG                                                                                                   >  2:1675076/1‑91

      ATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAG                                                                                                   >  1:559873/1‑91

      ATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAG                                                                                                   >  1:559688/1‑91

      ATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAG                                                                                                   >  1:559188/1‑91

      ATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAG                                                                                                   >  1:3877342/1‑91

      ATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAG                                                                                                   >  1:3877310/1‑91

      ATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAG                                                                                                   >  2:3392274/1‑91

       TAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGACTTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGC                                                                                                  >  2:343200/1‑91

       TAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGC                                                                                                  <  1:3096753/91‑1

       TAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGC                                                                                                  >  1:2222716/1‑91

        AGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCA                                                                                                 >  1:3128948/1‑91

        AGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCA                                                                                                 >  1:677810/1‑91

        AGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCA                                                                                                 >  1:3129123/1‑91

         GTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAG                                                                                                >  1:719649/1‑91

         GTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAG                                                                                                >  1:1717335/1‑91

         GTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAG                                                                                                <  2:2277687/91‑1

          TAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGT                                                                                               <  2:3747405/91‑1

          TAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGT                                                                                               <  1:3627123/91‑1

          TAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGT                                                                                               <  1:302992/91‑1

           AGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAATATAATTCTAATAGAAAACAGCAGTA                                                                                              >  1:3694671/1‑91

            GTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAA                                                                                             <  1:18462/91‑1

            GTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAA                                                                                             >  2:1798328/1‑91

            GTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAA                                                                                             >  2:2736606/1‑91

             TTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAG                                                                                            >  1:2795198/1‑91

                                  TTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATA‑AAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTC                                                                      <  1:3199795/91‑1

                                   TAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTC                                                                      <  1:1269778/91‑1

                                   TAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTC                                                                      <  2:2956153/91‑1

                                     ATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAATACTGCAGTAAGGTTGTTAACACTTAGAAAAGTCTT                                                                    <  2:178901/91‑1

                                     ATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTT                                                                    <  1:3717997/91‑1

                                      TCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTA                                                                   <  1:1778607/91‑1

                                        ATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACT                                                                 <  1:3309050/91‑1

                                        ATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACT                                                                 <  1:1650512/91‑1

                                        ATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACT                                                                 <  1:3082936/91‑1

                                           TTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCT                                                              <  2:3557333/91‑1

                                                                                          AAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAA               >  2:626357/1‑91

                                                                                          AAAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAA               >  2:1116651/1‑91

                                                                                           AAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAA              <  1:2888934/91‑1

                                                                                           AAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAA              >  2:1040211/1‑91

                                                                                           AAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAA              <  2:1599368/91‑1

                                                                                           AAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAA              <  1:705593/91‑1

                                                                                           AAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAA              <  2:61072/91‑1

                                                                                           AAACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAA              <  1:2672800/91‑1

                                                                                            AACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAAC             <  1:797126/91‑1

                                                                                            AACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAAC             >  1:759904/1‑91

                                                                                            AACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAAC             >  1:2838858/1‑91

                                                                                             ACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACA            <  1:2173073/91‑1

                                                                                             ACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACA            <  1:2174306/91‑1

                                                                                             ACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACA            <  2:1290696/91‑1

                                                                                             ACAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACA            <  2:1292954/91‑1

                                                                                              CAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAA           >  1:3618134/1‑91

                                                                                              CAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAA           >  2:331305/1‑91

                                                                                              CAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAA           >  2:1142525/1‑91

                                                                                              CAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAA           >  2:331733/1‑91

                                                                                              CAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAA           >  1:2821701/1‑91

                                                                                              CAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAA           >  2:331747/1‑91

                                                                                              CAGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAAATATCTTTAATGCACAAAGGAATTCGATACGAAACAt           >  2:3910685/1‑90

                                                                                               AGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAA          <  2:2454632/91‑1

                                                                                               AGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAA          <  2:3535747/91‑1

                                                                                               AGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAA          <  2:3963481/91‑1

                                                                                               AGCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAA          <  1:1196965/91‑1

                                                                                                GCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAAT         >  2:2987004/1‑91

                                                                                                GCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAAT         >  2:83293/1‑91

                                                                                                GCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAAT         <  2:675610/91‑1

                                                                                                GCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAAT         >  2:1157080/1‑91

                                                                                                GCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAAT         <  1:1152685/91‑1

                                                                                                GCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAAT         <  1:2340116/91‑1

                                                                                                GCAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAAT         >  1:1685313/1‑91

                                                                                                 CAGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATA        <  2:3387332/91‑1

                                                                                                  AGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTTTATTCGAATTCTCTTTAATGAAAACAGGAATTCGATCCGCAACAAATgt       >  2:628409/1‑89

                                                                                                  AGTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATAT       >  1:1340717/1‑91

                                                                                                   GTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATG      <  1:2170942/91‑1

                                                                                                   GTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATG      >  1:1039376/1‑91

                                                                                                   GTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATG      >  1:1117913/1‑91

                                                                                                   GTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATG      <  2:585502/91‑1

                                                                                                   GTAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATG      <  1:487745/91‑1

                                                                                                    TAAGGATGCTGACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGA     <  1:2490685/91‑1

                                                                                                    TAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGA     <  2:2872004/91‑1

                                                                                                    TAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGA     <  2:3605575/91‑1

                                                                                                    TAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGA     >  2:3607801/1‑91

                                                                                                    TAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGA     <  1:2269678/91‑1

                                                                                                    TAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGA     <  1:2490467/91‑1

                                                                                                    TAAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGA     <  2:1258433/91‑1

                                                                                                     AAGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGAT    >  2:2226155/1‑91

                                                                                                      AGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGATT   <  1:1994777/91‑1

                                                                                                      AGGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGATT   <  1:1363400/91‑1

                                                                                                       GGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGATTA  <  2:118298/91‑1

TTTACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1708546‑1708649

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacagcagtaagGATGCTAACACTTAGAAAAGTCTTACTGCTGTTTTCTATTAGAATTATCTTTAATGCACAAAGGAATTCGATACGAAACAAATATGATTA  <  USA300TCH1516_ALE/1708670‑1708581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.