| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1731936 | 179 (0.880) | 10 (0.060) | 4/142 | NT | 5.5% | coding (136/1014 nt) | limB_2 | Limonene 1,2‑monooxygenase |
| ? | USA300TCH1516_ALE | = 1731960 | 185 (1.020) | coding (160/1014 nt) | limB_2 | Limonene 1,2‑monooxygenase | |||||
TTCGAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1731838‑1731936‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctgaacTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCATATCAT < USA300TCH1516_ALE/1731960‑1731871 TTCGAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGAT < 2:1316835/91‑1TTCGAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGAT < 2:249963/91‑1TTCGAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGAT < 1:3447616/91‑1 TCGAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATT < 1:1793040/91‑1 CGAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTG > 2:2023862/1‑91 GAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGC < 2:1461309/91‑1 GAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGC > 2:2047369/1‑91 AGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCT > 1:116604/1‑91 AGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCT > 1:3802710/1‑91 AGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCT > 1:3802696/1‑91 GAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTG < 2:1443512/91‑1 GAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTG > 1:2996417/1‑91 GAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATATAGACGAATTATCATATGAAAGATATTGGATTGCTG > 2:1666673/1‑91 AAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGA < 1:3911651/91‑1 AAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGA < 1:1805033/91‑1 AGGTGAAGATTAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAA < 2:2300634/91‑1 ATGATATTGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGTGTTATGGTG < 1:1968488/91‑1 ATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGACATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTG < 2:3664902/91‑1 GATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTT < 1:1054239/91‑1 ATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTC < 1:2598849/91‑1 ATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTC < 1:2598792/91‑1 ATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTC < 1:2598707/91‑1 ATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTC < 1:2598422/91‑1 GGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCA < 1:768382/91‑1 GGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCA < 1:768474/91‑1 GGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCA < 1:768876/91‑1 TTGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAAC > 1:1165342/1‑91 TGCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACC < 2:3649047/91‑1 GCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCA > 2:3681843/1‑91 GCTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCA < 1:883464/91‑1 CTGAACTTACTAGGTTGGGAGCGTTATGGTGTTTAGCCATCCAATACCTTTCATATGATCATTCGTCTAAATGTTGTGCGAGATTAACCAT > 1:3151271/1‑91 CTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCAT > 2:3043707/1‑91 CTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCAT > 2:962073/1‑91 CTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCAT < 1:585121/91‑1 CTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCAT < 1:584599/91‑1 CTGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCAT > 1:3109064/1‑91 TGAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCATA < 1:3086463/91‑1 GAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCATAT > 2:3512504/1‑91 GAACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCATAT < 1:2492558/91‑1 ACTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCATATCA < 1:1055191/91‑1 CTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAATTGTTGTGCGAGATTAACCATATCAT > 1:3676736/1‑91 CTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCATATCAT > 2:1466471/1‑91 CTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCATATCAT > 1:3676435/1‑91 TTCGAGAAGGTGAAGATGAACAAACAGCAATTAATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1731838‑1731936‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgctgaacTTACTAGGTTGGGAGCGTTATGGTGTTCAGCAATCCAATATCTTTCATATGATAATTCGTCTAAATGTTGTGCGAGATTAACCATATCAT < USA300TCH1516_ALE/1731960‑1731871 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |