BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1731936	179 (0.880)	10 (0.060)	4/142	NT	5.5%	coding (136/1014 nt)	limB_2	Limonene 1,2‑monooxygenase
*	?	USA300TCH1516_ALE	= 1731960	185 (1.020)	10 (0.060)	4/142	NT	5.5%	coding (160/1014 nt)	limB_2	Limonene 1,2‑monooxygenase

Only 100 of 245 total aligned reads displayed.

AATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTAATCATG  >  USA300TCH1516_ALE/1731870‑1732050

    atatGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAgttc                                                                                        <  1:2492558‑M2/91‑5 (MQ=255)

    atatGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAgttc                                                                                        >  2:3512504‑M2/1‑87 (MQ=255)

      atGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAgttcag                                                                                      >  2:962073‑M2/1‑85 (MQ=255)

      atGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAgttcag                                                                                      <  1:584599‑M2/91‑7 (MQ=255)

      atGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAgttcag                                                                                      >  2:3043707‑M2/1‑85 (MQ=255)

      atGGTTAATCTCGCACAACATTTAGACGAATGATCATATGAAAGGTATTGGATGGCTAAACACCATAACGCTCCCAACCTAGTAAgttcag                                                                                      >  1:3151271‑M2/1‑85 (MQ=255)

       tGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAgttcagc                                                                                     <  1:883464‑M2/91‑8 (MQ=255)

         gTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAgttcagcaa                                                                                   >  1:1165342‑M2/1‑82 (MQ=255)

           tAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACt                                                                                 >  1:1682444/1‑91 (MQ=255)

           tAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACt                                                                                 <  2:2724348/91‑1 (MQ=255)

           tAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACt                                                                                 >  1:1830824/1‑91 (MQ=255)

             aTCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGc                                                                               <  1:2676071/91‑1 (MQ=255)

              tctcGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCt                                                                              <  2:2798646/91‑1 (MQ=255)

               ctcGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCtt                                                                             <  2:3077787/91‑1 (MQ=255)

                tcGCACAACATTTAGACGAA‑TATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTtta                                                                           <  2:300258/91‑1 (MQ=255)

                 cGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTtta                                                                           <  2:549812/91‑1 (MQ=255)

                  gCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTttat                                                                          >  1:2585868/1‑91 (MQ=255)

                  gCACAACATTTAGACGAATTATCATATGAAAGATAGTGGATTGCTGAACACCATAACGCCCCTGACCCAGTAAGATCAGCAACTGCTttat                                                                          >  2:3219777/1‑91 (MQ=255)

                    acaacaTTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTttatta                                                                        <  1:228505/91‑1 (MQ=255)

                     caacaTTTAGACGAATTATCATATGACAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTaa                                                                       >  2:2242606/1‑91 (MQ=255)

                     caacaTTTAGACGAATTATCATATGAAAGATATTGGGTTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTaa                                                                       <  2:3113519/91‑1 (MQ=255)

                     caacaTTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTaa                                                                       <  2:3704908/91‑1 (MQ=255)

                        caTTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTc                                                                    <  1:1618937/91‑1 (MQ=255)

                        caTTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTc                                                                    <  2:488226/91‑1 (MQ=255)

                         aTTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCa                                                                   >  1:1211111/1‑91 (MQ=255)

                          tttAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCaa                                                                  <  1:705198/91‑1 (MQ=255)

                          tttAGACGAATTATCATATGAAAGATACCGGATCGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAACTCaa                                                                  >  2:3040345/1‑91 (MQ=255)

                             aGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCTAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACAt                                                               <  2:847043/91‑1 (MQ=255)

                             aGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACAt                                                               >  1:2793537/1‑91 (MQ=255)

                               aCGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATAc                                                             >  1:3774435/1‑91 (MQ=255)

                               aCGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATAc                                                             >  1:1871782/1‑91 (MQ=255)

                                 gAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGt                                                           <  2:1050865/91‑1 (MQ=255)

                                  aaTTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGtt                                                          <  2:1346049/91‑1 (MQ=255)

                                     tATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGa                                                       >  1:2160410/1‑91 (MQ=255)

                                       tCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAAc                                                     <  2:3097374/91‑1 (MQ=255)

                                       tCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAAc                                                     >  1:3126053/1‑91 (MQ=255)

                                          tatGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATa                                                  <  1:3815394/91‑1 (MQ=255)

                                           atGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAGGTTCAGCAACTGCTTTATTAATTCAACATGCGTTAGAACATAc                                                 >  1:3957487/1‑91 (MQ=255)

                                             gAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGa                                               <  2:1621394/91‑1 (MQ=255)

                                             gAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGa                                               <  1:2739927/91‑1 (MQ=255)

                                               aaGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGaaa                                             <  1:319373/91‑1 (MQ=255)

                                                aGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAac                                            <  1:906608/91‑1 (MQ=255)

                                                aGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAac                                            >  1:2117775/1‑91 (MQ=255)

                                                  atatTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAacac                                          >  2:2633695/1‑91 (MQ=255)

                                                   tatTGGGTTGCTGAACACCATAACGCTCCCAACCTAGTAAATTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAAcaca                                         <  2:2704177/91‑1 (MQ=255)

                                                     ttGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATa                                       <  1:1713450/91‑1 (MQ=255)

                                                     ttGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATa                                       >  1:2393331/1‑91 (MQ=255)

                                                     ttGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATa                                       >  2:1748660/1‑91 (MQ=255)

                                                     ttGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATa                                       <  1:80827/91‑1 (MQ=255)

                                                      tGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATAc                                      <  1:2676318/91‑1 (MQ=255)

                                                       ggATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATGCGTTAGAACATACGAAACACATACg                                     >  1:3688904/1‑91 (MQ=255)

                                                       ggATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACg                                     >  2:934464/1‑91 (MQ=255)

                                                       ggATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACg                                     <  1:2030994/91‑1 (MQ=255)

                                                       ggATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACg                                     >  2:419909/1‑91 (MQ=255)

                                                         aTTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATAcatg                                   >  1:2917759/1‑88 (MQ=255)

                                                           tGCTGAACACCATAACGCTCCCAACCTAGTAAgttcagcaatccaatatctttcatatgataattcgtctaaatgttgtgcgagattaacc                                 <  1:768474‑M2/91‑60 (MQ=255)

                                                           tGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTa                                 <  1:1694764/91‑1 (MQ=255)

                                                            gCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAg                                <  2:1710416/91‑1 (MQ=255)

                                                            gCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAg                                >  2:1449655/1‑91 (MQ=255)

                                                            gCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAg                                <  2:1246929/91‑1 (MQ=255)

                                                             cTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAgg                               >  1:25289/1‑91 (MQ=255)

                                                             cTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAgg                               <  2:1137754/91‑1 (MQ=255)

                                                             cTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAgg                               >  1:255888/1‑91 (MQ=255)

                                                              tGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGt                              <  2:1205654/91‑1 (MQ=255)

                                                               gAACACCATAACGCTCCCAACCTAGTAAgttcagcaatccaatatctttcatatgataattcgtctaaatgttgtgcgagattaaccatat                             <  1:2598849‑M2/91‑64 (MQ=255)

                                                               gAACACCATAACGCTCCCAACCTAGTAAgttcagcaatccaatatctttcatatgataattcgtctaaatgttgtgcgagattaaccatat                             <  1:2598422‑M2/91‑64 (MQ=255)

                                                                aaCGCCATATCGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTc                            <  1:3557424/91‑1 (MQ=255)

                                                                aaCACCATAACGCTCCCAACCTAGTAAgttcagcaatccaatatctttcatatgataattcgtctaaatgttgtgcgagattaaccatatc                            <  1:1054239‑M2/91‑65 (MQ=255)

                                                                 acacCATAACGCTCCCTACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCt                           <  2:3041570/91‑1 (MQ=255)

                                                                 acacCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCt                           <  1:1670665/91‑1 (MQ=255)

                                                                  cacCATAACGCTCCCAACCTAGTAAgttcagcaatccaatgtctttcatatgataattcgtctaaatgttgtgcgagattaaccatatcat                          <  2:3664902‑M2/91‑67 (MQ=255)

                                                                  cacCATAACACTCCCAACCTAGTAAgttcagcaatccaatatctttcatatgataattcgtctaaatgttgtgcgagattaacaatatcat                          <  1:1968488‑M2/91‑67 (MQ=255)

                                                                   acCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTgg                         <  1:2183402/91‑1 (MQ=255)

                                                                   acCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTgg                         <  2:2382161/91‑1 (MQ=255)

                                                                   acCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTgg                         <  2:2817259/91‑1 (MQ=255)

                                                                    ccATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGa                        <  2:2108186/91‑1 (MQ=255)

                                                                      aTAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAgg                      >  1:752655/1‑91 (MQ=255)

                                                                       tAACGCTCCCAGCCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATGGGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGc                     <  2:3253426/91‑1 (MQ=255)

                                                                       tAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGAGTAGGTTCTGGAGGc                     >  1:3648329/1‑91 (MQ=255)

                                                                         aCGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGcat                   >  1:1911701/1‑91 (MQ=255)

                                                                         aCGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGcat                   <  1:2982050/91‑1 (MQ=255)

                                                                           gCTCGCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGcatca                 <  2:1111385/91‑1 (MQ=255)

                                                                            cTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGcatcat                <  1:174728/91‑1 (MQ=255)

                                                                             tCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATg               <  1:3900307/91‑1 (MQ=255)

                                                                              cccAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACTTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGt              <  2:1539518/91‑1 (MQ=255)

                                                                              cccAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGt              <  1:1485996/91‑1 (MQ=255)

                                                                                 aaCCTAGTAAGTTCAGCAACTGCTTTATTGATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGAATCATGTTAc           <  2:339130/91‑1 (MQ=255)

                                                                                 aaCCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTAc           <  1:2258990/91‑1 (MQ=255)

                                                                                    cTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTa        <  1:1010613/91‑1 (MQ=255)

                                                                                    cTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTa        >  2:3867993/1‑91 (MQ=255)

                                                                                    cTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTa        >  1:3257698/1‑91 (MQ=255)

                                                                                    cTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTa        >  1:1004542/1‑91 (MQ=255)

                                                                                     tAGTAAGCTCAGCAACTGCTTTACTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGCTCTGGACGCATCATGTTACCTac       >  2:1026019/1‑90 (MQ=255)

                                                                                      aGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTCGGTTCTGGAGGCATCATGTTACCTAAt      >  2:3348392/1‑91 (MQ=255)

                                                                                      aGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTAAt      >  1:207167/1‑91 (MQ=255)

                                                                                       gTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTAATc     <  1:3483260/91‑1 (MQ=255)

                                                                                        tAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTAATCa    >  1:532087/1‑91 (MQ=255)

                                                                                        tAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTAATCa    >  2:739248/1‑91 (MQ=255)

                                                                                          aGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATTCGTGTAGGTTCTGGAGGCATCATGTTACCTAATCATg  <  2:1174539/91‑1 (MQ=255)

                                                                                          aGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTAATCATg  >  2:2193428/1‑91 (MQ=255)

AATGATATGGTTAATCTCGCACAACATTTAGACGAATTATCATATGAAAGATATTGGATTGCTGAACACCATAACGCTCCCAACCTAGTAAGTTCAGCAACTGCTTTATTAATTCAACATACGTTAGAACATACGAAACACATACGTGTAGGTTCTGGAGGCATCATGTTACCTAATCATG  >  USA300TCH1516_ALE/1731870‑1732050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.