| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1755658 = | 146 (0.720) | 18 (0.100) | 11/142 | NT | 11.8% | intergenic (‑55/+300) | obg/rpmA | GTPase Obg/50S ribosomal protein L27 |
| ? | USA300TCH1516_ALE | 1755694 = | 140 (0.780) | intergenic (‑91/+264) | obg/rpmA | GTPase Obg/50S ribosomal protein L27 | |||||
ACCACAATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGGGCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1755756‑1755658‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggggctct‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAAC > USA300TCH1516_ALE/1755694‑1755782 ACCACAATTAGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAA < 1:3782098/91‑1 CCACAATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAG > 1:2540501/1‑91 CACAATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGG > 1:312266/1‑91 ACAATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGG < 1:2442255/91‑1 AATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGGGC < 1:1029831/91‑1 AATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGGGC < 1:2972383/91‑1 AATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGGGC < 1:2934412/91‑1 ATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGGGCT < 2:2335683/91‑1 TTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGGGCTC < 2:3662288/91‑1 TGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGGGCTCT < 1:317731/91‑1 AAGAGCCCCTAATTATTTACAATATATAAGGGGCTCTAATATGCAGTTCCTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCA > 2:3226317/1‑91 AGCCCCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAAT > 2:3079056/1‑91 GCCCCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATT > 1:316515/1‑91 CCCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGT > 1:349798/1‑91 CCCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGT > 1:349735/1‑91 CCCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGT > 1:929072/1‑91 CCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTACAATACTTATATTTCTCAGCACCAATTGTG > 1:3170500/1‑91 CCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTG > 1:1906016/1‑91 CCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTG > 1:1905787/1‑91 CCTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTG > 1:1905872/1‑91 CTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGG > 1:2235329/1‑91 CTAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGG > 1:3552625/1‑91 TAATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGT > 2:1800020/1‑91 AATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTA > 2:2367303/1‑91 ATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTAC > 1:2959089/1‑91 ATTATTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTAC > 2:2701999/1‑91 TTTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTT > 2:3491361/1‑91 TTACAATATATAAGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTT > 2:1690533/1‑91 tagcGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAAC < 1:3114025/87‑1 AGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACG > 2:2416325/1‑91 AGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACG > 1:1307076/1‑91 AGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACG > 2:805133/1‑91 AGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACG > 2:3757494/1‑91 AGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACG > 1:3447566/1‑91 AGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACG > 1:2451159/1‑91 AGGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACG > 1:2450893/1‑91 GGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGC < 1:1585059/91‑1 GGGGCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGC < 1:1584767/91‑1 GCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGC < 2:121515/91‑1 GCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGC > 1:3778978/1‑91 GCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGC < 1:3539023/91‑1 GCTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGC < 2:2706457/91‑1 CTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCA > 1:885344/1‑91 CTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCA < 2:782584/91‑1 CTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCA < 2:454837/91‑1 CTCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCA < 2:3274473/91‑1 TCT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAA > 1:1912518/1‑91 CT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACNGTTTATTCTTTAAACGCTGCAAC > 2:1039191/1‑91 CT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAAC < 2:2914126/91‑1 CT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAAC < 2:2822116/91‑1 CT‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAAC < 1:1357014/91‑1 ACCACAATTGGTGCTGAGAAATATAAGTATTTTAAAGCAAAGATTTATAAAAGTAACTGCATAAGAGCCCCTAATTATTTACAATATATAAGGGGCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1755756‑1755658‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggggctct‑‑TATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAAC > USA300TCH1516_ALE/1755694‑1755782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |