BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1755658 =	146 (0.720)	18 (0.100)	11/142	NT	11.8%	intergenic (‑55/+300)	obg/rpmA	GTPase Obg/50S ribosomal protein L27
*	?	USA300TCH1516_ALE	1755694 =	140 (0.780)	18 (0.100)	11/142	NT	11.8%	intergenic (‑91/+264)	obg/rpmA	GTPase Obg/50S ribosomal protein L27

Only 100 of 227 total aligned reads displayed.

ATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTG  >  USA300TCH1516_ALE/1755604‑1755784

atatCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCtt                                                                                            >  1:179921/1‑91 (MQ=255)

   tctcACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATg                                                                                         <  2:1767688/91‑1 (MQ=255)

   tctcACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATg                                                                                         <  2:1466336/91‑1 (MQ=255)

     tcACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCa                                                                                       >  2:315842/1‑91 (MQ=255)

     tcACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCa                                                                                       >  2:293383/1‑91 (MQ=255)

     tcACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCa                                                                                       >  1:2970698/1‑91 (MQ=255)

      cACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAg                                                                                      <  1:3388770/91‑1 (MQ=255)

      cACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAg                                                                                      <  1:2532241/91‑1 (MQ=255)

       aCCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGt                                                                                     >  1:1534417/1‑91 (MQ=255)

       aCCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGt                                                                                     <  1:1171724/91‑1 (MQ=255)

       aCCTCTTTTACATATAATTTTCATTTACCCAATAATTATAGCATATTAGAGACCCATATATATTGTAAATAATTAAGGGCTATTATGCAGt                                                                                     >  2:2246928/1‑91 (MQ=255)

        ccTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGtt                                                                                    <  2:2796083/91‑1 (MQ=255)

        ccTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGtt                                                                                    <  2:3712340/91‑1 (MQ=255)

          tctTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTAc                                                                                  >  2:3844001/1‑91 (MQ=255)

          tctTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTAc                                                                                  <  2:1663228/91‑1 (MQ=255)

           ctTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTTTAAATAATTAGGGGCTCTTATGCAGTTACt                                                                                 <  2:3752033/91‑1 (MQ=255)

            ttttACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACtt                                                                                >  1:2205733/1‑91 (MQ=255)

            ttttACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACtt                                                                                >  1:2205153/1‑91 (MQ=255)

             tttACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACttt                                                                               >  1:3745943/1‑91 (MQ=255)

             tttACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACttt                                                                               <  1:2852099/91‑1 (MQ=255)

              ttACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATCATTAGGGGCTCTTATGCAGTTACtttt                                                                              >  2:3602485/1‑91 (MQ=255)

                aCATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTtat                                                                            >  1:3015964/1‑91 (MQ=255)

                aCATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTtat                                                                            <  1:1632462/91‑1 (MQ=255)

                aCATATAATTTTCAATTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTTTATATAAGTAGGGGCTCTTATGCAGTTACTTTtat                                                                            >  1:863533/1‑91 (MQ=255)

                    ataATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAAt                                                                        >  2:1104811/1‑91 (MQ=255)

                     taATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATc                                                                       >  2:3304965/1‑91 (MQ=255)

                     taATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATc                                                                       <  1:2140554/91‑1 (MQ=255)

                     taATTTTCATTTGCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATc                                                                       >  1:3024418/1‑91 (MQ=255)

                       attttcattttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCtt                                                                     >  2:2954393/1‑91 (MQ=255)

                        ttttcattttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCttt                                                                    <  2:1448332/91‑1 (MQ=255)

                            cattttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCtt                                                                >  2:551411/1‑91 (MQ=255)

                              ttttcCCAATAATTATAGCATATTAGATCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTa                                                              >  2:1139718/1‑91 (MQ=255)

                              ttttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTa                                                              >  1:2559549/1‑91 (MQ=255)

                                ttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTaaa                                                            <  1:3494180/91‑1 (MQ=255)

                                  cccAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAAt                                                          >  1:2877251/1‑91 (MQ=255)

                                   ccAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATa                                                         <  2:273287/91‑1 (MQ=255)

                                    cAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATAc                                                        <  1:1019425/91‑1 (MQ=255)

                                    cAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATAc                                                        >  1:2466384/1‑91 (MQ=255)

                                    cAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATAc                                                        <  1:2350288/91‑1 (MQ=255)

                                     aataatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACt                                                       <  1:1610687/91‑1 (MQ=255)

                                      ataatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACtt                                                      >  2:2646632/1‑91 (MQ=255)

                                      ataatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACtt                                                      <  1:644239/91‑1 (MQ=255)

                                      ataatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGATTTAAAATACtt                                                      >  1:3815651/1‑91 (MQ=255)

                                       taatTATAGCATATTAGAGCCCCTTATATATTGTAAAGAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTta                                                     <  2:2924254/91‑1 (MQ=255)

                                        tatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTtat                                                    >  2:1243577/2‑91 (MQ=255)

                                        aatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTtat                                                    <  2:2113573/91‑1 (MQ=255)

                                        aatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTtat                                                    <  2:3741300/91‑1 (MQ=255)

                                        aatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTtat                                                    <  2:1474450/91‑1 (MQ=255)

                                         atTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTtata                                                   >  2:721782/1‑91 (MQ=255)

                                           tataGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATAtt                                                 <  1:1783675/91‑1 (MQ=255)

                                           tataGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATAtt                                                 <  1:1319406/91‑1 (MQ=255)

                                             taGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATTTTtc                                               >  1:27569/1‑91 (MQ=255)

                                              aGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTtct                                              >  1:1137976/1‑91 (MQ=255)

                                              aGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTtct                                              >  2:1651408/1‑91 (MQ=255)

                                              aGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTT‑AAATACTTATATTtctc                                             >  1:1284526/1‑91 (MQ=255)

                                                cATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCa                                            <  1:1845035/91‑1 (MQ=255)

                                                cATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCa                                            <  2:3433436/91‑1 (MQ=255)

                                                  tatTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGc                                          <  1:2663114/91‑1 (MQ=255)

                                                   atTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCa                                         <  1:431417/91‑1 (MQ=255)

                                                   atTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCa                                         >  1:3003343/1‑91 (MQ=255)

                                                   aagagcccctaattatttacaatatataaggggctctaaTATGCAGTTCCTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCa                                         >  2:3226317‑M2/40‑91 (MQ=255)

                                                    ttAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCAc                                        <  2:2803916/91‑1 (MQ=255)

                                                     tAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCAcc                                       <  2:3132730/91‑1 (MQ=255)

                                                        agcccctaattatttacaatatataaggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAAt                                    >  2:3079056‑M2/35‑91 (MQ=255)

                                                           ccctaattatttacaatatataaggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATtgt                                 >  1:349798‑M2/32‑91 (MQ=255)

                                                           CCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATtgt                                 <  1:2442255‑M1/91‑1 (MQ=255)

                                                            cctaattatttacaatatataaggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTACAATACTTATATTTCTCAGCACCAATtgtg                                >  1:3170500‑M2/31‑91 (MQ=255)

                                                            cctaattatttacaatatataaggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATtgtg                                >  1:1905787‑M2/31‑91 (MQ=255)

                                                            CCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATtgtg                                >  1:312266‑M1/1‑91 (MQ=255)

                                                             ctaattatttacaatatataaggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTgg                               >  1:2235329‑M2/30‑91 (MQ=255)

                                                               tatataTTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTAAAAATCTTTGCTTTAAAATCCTTATATTTCTCAGCACCAATTGTGGTa                             >  2:3052333/1‑91 (MQ=255)

                                                               aattatttacaatatataaggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTa                             >  2:2367303‑M2/28‑91 (MQ=255)

                                                                attatttacaatatataaggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTAc                            >  2:2701999‑M2/27‑91 (MQ=255)

                                                                atatatTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTAc                            >  1:3200056/1‑91 (MQ=255)

                                                                atatatTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTAc                            >  1:789499/1‑91 (MQ=255)

                                                                atatatTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTAc                            >  2:159104/1‑91 (MQ=255)

                                                                    tttacaatatataaggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGtt                        >  2:3491361‑M2/23‑91 (MQ=255)

                                                                    atTGTAAATAATTAGGGGCTCTTATGCAGTTACTCTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGtt                        >  2:2610405/1‑91 (MQ=255)

                                                                     ttGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGttt                       <  1:1489485/91‑1 (MQ=255)

                                                                     ttGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGttt                       <  2:3274192/91‑1 (MQ=255)

                                                                     ttGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTACAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGttt                       >  1:3331075/1‑91 (MQ=255)

                                                                      tGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTa                      <  1:945527/91‑1 (MQ=255)

                                                                      tGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTa                      <  2:1890024/91‑1 (MQ=255)

                                                                       gTAAATAATTAGGGGCTCTTATGCAGTTACTTTTAGAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTAt                     <  2:2830384/91‑1 (MQ=255)

                                                                          aatattTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCt                  <  2:3349827/91‑1 (MQ=255)

                                                                          aataatTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCt                  <  1:1157625/91‑1 (MQ=255)

                                                                            taatTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCttt                <  1:1847529/91‑1 (MQ=255)

                                                                            taatTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCttt                <  2:635796/91‑1 (MQ=255)

                                                                             aatTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTa               >  1:3614060/1‑91 (MQ=255)

                                                                              atTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTaa              >  2:141622/1‑91 (MQ=255)

                                                                              atTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTaa              <  2:2418047/91‑1 (MQ=255)

                                                                              atTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTaa              >  2:1292359/1‑91 (MQ=255)

                                                                                tAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAAc            <  2:799688/91‑1 (MQ=255)

                                                                                 aggggctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACg           >  1:2451159‑M2/10‑91 (MQ=255)

                                                                                     gctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGc       >  1:3778978‑M2/6‑91 (MQ=255)

                                                                                      ctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCa      <  2:454837‑M2/87‑1 (MQ=255)

                                                                                      ctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCa      <  2:3274473‑M2/87‑1 (MQ=255)

                                                                                      ctctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCa      <  2:782584‑M2/87‑1 (MQ=255)

                                                                                       tctTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCaa     >  1:1912518‑M2/4‑91 (MQ=255)

                                                                                          tATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTg  <  2:1529261/91‑1 (MQ=255)

ATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCAATTGTGGTACAGTTTATTCTTTAAACGCTGCAACTG  >  USA300TCH1516_ALE/1755604‑1755784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.