BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1755658 =	146 (0.720)	18 (0.100)	11/142	NT	11.8%	intergenic (‑55/+300)	obg/rpmA	GTPase Obg/50S ribosomal protein L27
*	?	USA300TCH1516_ALE	1755694 =	140 (0.780)	18 (0.100)	11/142	NT	11.8%	intergenic (‑91/+264)	obg/rpmA	GTPase Obg/50S ribosomal protein L27

Only 100 of 274 total aligned reads displayed.

GGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCA  >  USA300TCH1516_ALE/1755568‑1755748

ggCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTA                                                                                            <  1:2082974‑M1/91‑1 (MQ=255)

 gCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAG                                                                                           >  2:2756803‑M1/1‑91 (MQ=255)

 gCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAG                                                                                           >  2:3629294‑M1/1‑91 (MQ=255)

 gCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAG                                                                                           <  1:3316100‑M1/91‑1 (MQ=255)

   tgcagcgtttaaagaataaactgtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataagag                                                                                         <  2:454837‑M1/4‑1 (MQ=255)

   tgcagcgtttaaagaataaactgtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataagag                                                                                         >  1:885344‑M1/88‑91 (MQ=255)

    ttAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGC                                                                                        >  1:1821553‑M1/1‑91 (MQ=255)

     tAAGAGATATTTTGACTAGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCC                                                                                       <  2:790763‑M1/91‑1 (MQ=255)

      aaGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCC                                                                                      >  1:2429840‑M1/1‑91 (MQ=255)

       gcgtttaaagaataaactgtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGcccc                                                                                     <  1:1585059‑M1/8‑1 (MQ=255)

       agagATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCC                                                                                     >  1:2013000‑M1/1‑91 (MQ=255)

        gagaTATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCT                                                                                    <  2:2093125‑M1/91‑1 (MQ=255)

        gagaTATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCT                                                                                    <  2:2935352‑M1/91‑1 (MQ=255)

        cgtttaaagaataaactgtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCt                                                                                    >  2:2416325‑M1/83‑91 (MQ=255)

        cgtttaaagaataaactgtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCt                                                                                    >  2:3757494‑M1/83‑91 (MQ=255)

         gtttaaagaataaactgtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataagagccgcta                                                                                   <  1:3114025‑M1/10‑5 (MQ=255)

         agaTATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCtt                                                                                   <  1:1222455/91‑1 (MQ=255)

         agaTATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCtt                                                                                   <  1:2892687/91‑1 (MQ=255)

           atatTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTtat                                                                                 <  2:2856612/91‑1 (MQ=255)

            tatTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTtata                                                                                >  1:632676/1‑91 (MQ=255)

             atTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTtatat                                                                               <  2:1678614/91‑1 (MQ=255)

              ttttGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTtatata                                                                              >  2:187819/1‑91 (MQ=255)

               tttGACTTGATCGACAAACATATATATCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTatatat                                                                             <  1:3681242/91‑1 (MQ=255)

                ttGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATAtt                                                                            <  2:1620105/91‑1 (MQ=255)

                ttGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATGTTCCCAGTAATTATAGCATATTAGAGCCCGTTATATAtt                                                                            >  1:178007/1‑91 (MQ=255)

                 tGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTg                                                                           >  2:3245771/1‑91 (MQ=255)

                  gACTTGATCGACAAACCTATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGt                                                                          >  2:2578762/1‑91 (MQ=255)

                    ctggATCGACAAACATATATCTCACCTCTTTTACATCTACTTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTaa                                                                        <  2:1235644/88‑1 (MQ=255)

                    cTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTaa                                                                        <  1:2866939/91‑1 (MQ=255)

                       gATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTaattatttacaatat                                                                     <  1:496212‑M1/91‑16 (MQ=255)

                       gATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAaata                                                                     >  1:940896/1‑91 (MQ=255)

                       gATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATAAGAGCCCCTaattatttacaatat                                                                     <  1:2723390‑M1/91‑16 (MQ=255)

                        aTCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAaataa                                                                    >  1:2683016/1‑91 (MQ=255)

                         tCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAaataat                                                                   <  1:1891484/91‑1 (MQ=255)

                         gtaccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCTTATATATTGTAaataat                                                                   >  1:2959089‑M1/66‑91 (MQ=255)

                           gACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTa                                                                 >  2:1332500‑M2/1‑90 (MQ=255)

                            ccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCTTATATATTGTAAATAATTAg                                                                >  1:2235329‑M1/63‑91 (MQ=255)

                            ccacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCTTATATATTGTAAATAATTAg                                                                >  1:3552625‑M1/63‑91 (MQ=255)

                            aCAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTaattatttacaatatataag                                                                <  2:3558916‑M1/91‑21 (MQ=255)

                            aCAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTag                                                                <  2:3545818‑M2/91‑3 (MQ=255)

                            aCAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTag                                                                >  2:2710198‑M2/1‑89 (MQ=255)

                            aCAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTag                                                                >  1:1475724‑M2/1‑89 (MQ=255)

                             cacaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCTTATATATTGTAAATAATTAgg                                                               >  1:1906016‑M1/62‑91 (MQ=255)

                             cacaattggtgctgagaaatataagtattgtaaagcaaagatttataaaagtaactgcataAGAGCCCCTTATATATTGTAAATAATTAgg                                                               >  1:3170500‑M1/62‑91 (MQ=255)

                             cAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTagg                                                               <  1:1572621‑M2/91‑4 (MQ=255)

                              agacaTATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTaggg                                                              >  2:1661130‑M2/3‑87 (MQ=255)

                              acaattggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCTTATATATTGTAAATAATTAggg                                                              >  1:349735‑M1/61‑91 (MQ=255)

                              aaaCATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTaattatttacaatatataaggg                                                              <  1:1084117‑M1/91‑23 (MQ=255)

                              aaaCATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTaattatttacaatatataaggg                                                              <  1:3545970‑M1/91‑23 (MQ=255)

                              aaaCATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTaggg                                                              <  1:1682279‑M2/91‑5 (MQ=255)

                               aaCATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTagggg                                                             >  1:3807887‑M2/1‑86 (MQ=255)

                                aCATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATA‑TTaggggct                                                           <  2:711219‑M2/91‑8 (MQ=255)

                                 cATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTaggggct                                                           <  2:2196141‑M2/91‑8 (MQ=255)

                                 attggtgctgagaaatataagtattttaaagcaaagatttataaaagtaactgcataAGAGCCCCTTATATATTGTAAATAATTAGGGGct                                                           >  2:3079056‑M1/58‑91 (MQ=255)

                                    atatCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCtt                                                        >  1:275186/1‑91 (MQ=255)

                                    atagCTCACCTCTTTTACATATTATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTTTAAATAATTAGGGGCTCtt                                                        >  1:179571/1‑91 (MQ=255)

                                     tatCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTa                                                       >  2:3160169/1‑91 (MQ=255)

                                     tatCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTa                                                       <  1:1614346/91‑1 (MQ=255)

                                     tatCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTa                                                       >  2:1512039/1‑91 (MQ=255)

                                       tctcACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATg                                                     <  2:1767688/91‑1 (MQ=255)

                                        ctcACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGc                                                    <  2:3031958/91‑1 (MQ=255)

                                          cACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAg                                                  <  1:3388770/91‑1 (MQ=255)

                                          cACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAg                                                  <  1:2532241/91‑1 (MQ=255)

                                           aCCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGt                                                 <  1:1171724/91‑1 (MQ=255)

                                           aCCTCTTTTACATATAATTTTCATTTACCCAATAATTATAGCATATTAGAGACCCATATATATTGTAAATAATTAAGGGCTATTATGCAGt                                                 >  2:2246928/1‑91 (MQ=255)

                                            ccTCTTTTACATATAATTTTCATTTTCCCAATAATTTTAGCATATTAGAGCCCCTaattatttacaatatataaggggctctaatatgcta                                                <  2:3914935‑M1/91‑37 (MQ=255)

                                              tctTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTAc                                              >  2:3843967/1‑91 (MQ=255)

                                               ctTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACt                                             <  1:245373/91‑1 (MQ=255)

                                               ctTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACt                                             <  1:3619024/91‑1 (MQ=255)

                                               ctTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACt                                             >  2:2667534/1‑91 (MQ=255)

                                                ttttACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACtt                                            >  1:2205153/1‑91 (MQ=255)

                                                ttttACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACtt                                            >  1:2651693/1‑91 (MQ=255)

                                                 tttACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACttt                                           >  1:3745943/1‑91 (MQ=255)

                                                        ataATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAAt                                    >  2:679237/1‑91 (MQ=255)

                                                        ataATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAAt                                    >  2:1104811/1‑91 (MQ=255)

                                                         taATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATc                                   >  2:3304965/1‑91 (MQ=255)

                                                         taATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATc                                   >  1:3023670/1‑91 (MQ=255)

                                                           attttcattttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCtt                                 >  2:2954393/1‑91 (MQ=255)

                                                            ttttcattttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCttt                                <  2:1448332/91‑1 (MQ=255)

                                                                cattttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCtt                            >  2:551411/1‑91 (MQ=255)

                                                                 attttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCttt                           >  2:2708147/1‑91 (MQ=255)

                                                                  ttttcCCAATAATTATAGCATATTAGATCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTa                          >  2:1139718/1‑91 (MQ=255)

                                                                   tttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTaa                         >  1:2461462/1‑91 (MQ=255)

                                                                   tttcCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTaa                         >  1:845482/1‑91 (MQ=255)

                                                                       ccAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATa                     <  2:273287/91‑1 (MQ=255)

                                                                        cAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATAc                    <  1:2350288/91‑1 (MQ=255)

                                                                        cAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATAc                    <  1:1019425/91‑1 (MQ=255)

                                                                         aataatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATAcc                   >  1:1264532/1‑90 (MQ=255)

                                                                           taatTATAGCATATTAGAGCCCCTTATATATTGTAAAGAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTta                 <  2:2924254/91‑1 (MQ=255)

                                                                            aatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTtat                <  2:3741300/91‑1 (MQ=255)

                                                                            aatTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTtat                <  2:2113573/91‑1 (MQ=255)

                                                                             atTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTtata               <  1:30058/91‑1 (MQ=255)

                                                                               tataGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATAtt             <  1:1319406/91‑1 (MQ=255)

                                                                                 taGCATATTAGAGCCCCTTATATATTGTAAATAATTaggggctcttatatgctataattattgggaaaatgaaaattatatgtaaaagagg           <  2:1432677‑M2/91‑56 (MQ=255)

                                                                                  aGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTtct          >  1:2206231/1‑91 (MQ=255)

                                                                                    cATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCa        <  2:3433436/91‑1 (MQ=255)

                                                                                     atatTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAg       <  1:3836974/91‑1 (MQ=255)

                                                                                        ttAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCAc    <  2:2803916/91‑1 (MQ=255)

                                                                                        ttAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCAc    <  1:2831452/91‑1 (MQ=255)

                                                                                         tAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCAcc   <  2:3132730/91‑1 (MQ=255)

GGCTTTAAGAGATATTTTGACTTGATCGACAAACATATATCTCACCTCTTTTACATATAATTTTCATTTTCCCAATAATTATAGCATATTAGAGCCCCTTATATATTGTAAATAATTAGGGGCTCTTATGCAGTTACTTTTATAAATCTTTGCTTTAAAATACTTATATTTCTCAGCACCA  >  USA300TCH1516_ALE/1755568‑1755748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.