| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1772785 | 176 (0.860) | 19 (0.110) | 13/142 | NT | 10.4% | coding (148/816 nt) | USA300HOU_RS08850 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1772792 | 172 (0.950) | coding (141/816 nt) | USA300HOU_RS08850 | hypothetical protein | |||||
TGAAATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1772687‑1772785‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattgtttgGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTAAG < USA300TCH1516_ALE/1772792‑1772703 TGAAATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAG < 2:1506497/91‑1TGAAATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAG > 2:3712751/1‑91 GAAATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACACTAATGGAATATGTCTAGAATGTATAATAAAAATAGATAAAGAGA > 2:3597293/1‑91 AAATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGAT < 1:2266089/91‑1 AATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATT > 1:1088107/1‑91 AATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATT > 1:1181421/1‑91 AATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATT > 2:1462589/1‑91 AATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATT > 2:261690/1‑91 AATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATT > 1:2311772/1‑91 TAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATACAGAGATTGT > 1:3790132/1‑91 TAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGT < 1:3136435/91‑1 TAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGT > 2:1112524/1‑91 TAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGT < 1:1036741/91‑1 TAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGT < 2:3089021/91‑1 AATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTT < 1:626546/91‑1 AATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTT > 2:2965725/1‑91 ATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTT > 1:922387/1‑91 TCACCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAGAGAGATTGTTTG < 1:3057963/91‑1 AGCCAACTTAAAGTATAGAATACATTTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGG < 2:3422648/91‑1 AACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTT < 1:2275060/91‑1 ACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTA < 2:2998031/91‑1 CTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGATTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTAC < 2:1687235/91‑1 TAAATTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAA < 2:1385964/91‑1 TAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAA < 2:3587739/91‑1 TAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAA < 1:958842/91‑1 TAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGG‑TTTACAAA < 2:293622/91‑1 AAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAA < 1:3539545/91‑1 AAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAA < 1:3542805/91‑1 GTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAA < 1:2694281/91‑1 GTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAA < 2:1725456/91‑1 GTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAA < 2:1725509/91‑1 TAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAATCT < 1:601338/91‑1 agACATCTGAAAGAGACCCTAATTGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGGTTTACAAACAATCTCTTT < 2:443044/89‑1 ACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAATCTCTTTAT < 1:1914672/91‑1 AAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTT < 2:2105629/91‑1 TGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACT < 1:1777370/91‑1 AGTTGGTATAATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCA < 1:2524519/91‑1 AATAAAAATAGATAAAGAGATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCT < 1:2429386/91‑1 ggcTTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTA > 1:2998296/4‑91 ATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAATCTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATA < 2:1498594/91‑1 ATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATA > 1:1639401/1‑91 ATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATA < 2:3494521/91‑1 ATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATA > 1:3202415/1‑91 ATTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATA > 1:1136510/1‑91 TTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATAC < 1:455903/91‑1 TTGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATAC < 1:1499411/91‑1 TGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACT < 2:1341664/91‑1 TGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACT < 2:1341789/91‑1 TGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACT > 1:3606242/1‑91 TGTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACT < 2:2851615/91‑1 GTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTT < 2:2277286/91‑1 GTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTT > 2:2886902/1‑91 GTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTT > 1:3203778/1‑91 GTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTT > 1:2248288/1‑91 GTTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTT < 1:2428921/91‑1 TTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTT > 2:844352/1‑91 TTTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTT > 2:3809053/1‑91 TTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTA > 1:171741/1‑91 TTGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTA > 1:170142/1‑91 TGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTAA > 2:3480903/1‑91 TGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTAA > 1:2679389/1‑91 TGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTAA > 1:3204366/1‑91 TGGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTAA > 1:3204548/1‑91 GGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTAAG > 1:1709735/1‑91 GGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTAAG > 1:416513/1‑91 TGAAATAATCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1772687‑1772785‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattgtttgGGTTTTACAAACAATCTCTTTATCTATTTTTATTATACAAACTAGACATATTCCATTAGGGTCTATTTCAGATGTATTCTATACTTTAAG < USA300TCH1516_ALE/1772792‑1772703 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |