BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1772785	176 (0.860)	19 (0.110)	13/142	NT	10.4%	coding (148/816 nt)	USA300HOU_RS08850	hypothetical protein
*	?	USA300TCH1516_ALE	= 1772792	172 (0.950)	19 (0.110)	13/142	NT	10.4%	coding (141/816 nt)	USA300HOU_RS08850	hypothetical protein

Only 100 of 250 total aligned reads displayed.

ACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTGATTAAG  >  USA300TCH1516_ALE/1772702‑1772882

aCTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAAcc                                                                                            >  1:3008609/1‑91 (MQ=255)

 cTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCc                                                                                           >  1:416513‑M2/1‑90 (MQ=255)

  ttAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCca                                                                                          >  1:2679389‑M2/1‑89 (MQ=255)

   tAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaa                                                                                         >  1:171741‑M2/1‑88 (MQ=255)

   tAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaa                                                                                         >  1:170142‑M2/1‑88 (MQ=255)

    aaaGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaa                                                                                        >  2:3809053‑M2/1‑87 (MQ=255)

     aaGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaac                                                                                       >  1:3203778‑M2/1‑86 (MQ=255)

     aaGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaac                                                                                       <  1:2428921‑M2/91‑6 (MQ=255)

      aGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaaca                                                                                      <  2:2851615‑M2/91‑7 (MQ=255)

      aGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaaca                                                                                      <  2:1341664‑M2/91‑7 (MQ=255)

        tataGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaacaat                                                                                    >  1:1136510‑M2/1‑83 (MQ=255)

          taGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATcc                                                                                  <  2:1637685/91‑1 (MQ=255)

          taGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATcc                                                                                  <  2:758667/91‑1 (MQ=255)

           aGATTACATCTGAAATAGACCCTATTGGAATATGTTTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATcct                                                                                 >  2:245073/1‑90 (MQ=255)

           aGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGCTAAAGAGATTGTTTGTAAAACCCAAACAATccc                                                                                 >  1:3234234/1‑91 (MQ=255)

             aaTACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCa                                                                               >  1:3199742/1‑91 (MQ=255)

             aaTACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCa                                                                               <  1:206419/91‑1 (MQ=255)

             aaTACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCa                                                                               >  1:468741/1‑91 (MQ=255)

              aTACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaa                                                                              >  2:896759/1‑91 (MQ=255)

                aCATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaata                                                                            <  1:3659071/91‑1 (MQ=255)

                aCATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaata                                                                            <  1:1591498/91‑1 (MQ=255)

                    cTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAGAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaataaata                                                                        >  1:3424490/1‑91 (MQ=255)

                     tGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAatat                                                                       <  1:1366260/91‑1 (MQ=255)

                     tGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAatat                                                                       >  1:836656/1‑91 (MQ=255)

                      gAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAatata                                                                      >  1:2814773/1‑91 (MQ=255)

                       aaaaAGTCCCTAATTGAATATGACTAGTTTGTATAATAAAGATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCTCCAATAAatatat                                                                     <  2:2731784/91‑1 (MQ=255)

                       aaaTAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAatatat                                                                     <  2:2905729/91‑1 (MQ=255)

                        aaTAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATg                                                                    >  2:2262994/1‑91 (MQ=255)

                          tAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGcc                                                                  >  2:3513537/1‑91 (MQ=255)

                           aGATCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATCTATGCCt                                                                 >  2:3501768/1‑91 (MQ=255)

                           aGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCt                                                                 <  1:1322503/91‑1 (MQ=255)

                             aCCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTaa                                                               <  2:1828321/91‑1 (MQ=255)

                              cccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTaaa                                                              >  1:1197122/1‑91 (MQ=255)

                               ccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTCAAACCCAAACAATCCCCAATAAATATATGCCTAAAc                                                             >  2:3124944/1‑91 (MQ=255)

                               ccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAAc                                                             >  1:252274/1‑91 (MQ=255)

                               ccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAAc                                                             <  2:143984/91‑1 (MQ=255)

                               ccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAAc                                                             >  2:1404640/1‑91 (MQ=255)

                                cTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACt                                                            >  1:357785/1‑91 (MQ=255)

                                cTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACt                                                            <  1:1929302/91‑1 (MQ=255)

                                 tAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACtt                                                           <  1:3820118/91‑1 (MQ=255)

                                  aaTGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTc                                                          >  2:3184357/1‑91 (MQ=255)

                                  aaTGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTc                                                          <  2:3075253/91‑1 (MQ=255)

                                  aaTGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTc                                                          <  2:2130740/91‑1 (MQ=255)

                                       aaTATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATc                                                     >  2:1996905/1‑91 (MQ=255)

                                         tatGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCtt                                                   <  1:894241/91‑1 (MQ=255)

                                          atGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTa                                                  <  1:1001374/91‑1 (MQ=255)

                                          atGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTa                                                  >  2:477988/1‑91 (MQ=255)

                                            gTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCATACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATg                                                >  2:3483768/1‑91 (MQ=255)

                                            gTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAGACAATCCACAATAAATATATGCCTAAACTTCTAATCTTATg                                                >  2:3485071/1‑91 (MQ=255)

                                            gTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATg                                                >  1:372358/1‑91 (MQ=255)

                                             tCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGa                                               <  1:2160041/91‑1 (MQ=255)

                                             tCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGa                                               >  2:1712726/1‑91 (MQ=255)

                                              cTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGAc                                              <  1:2354438/91‑1 (MQ=255)

                                               tAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACt                                             >  2:1499956/1‑91 (MQ=255)

                                               tAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACt                                             >  2:1979149/1‑91 (MQ=255)

                                                aGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACtt                                            >  1:1939808/1‑91 (MQ=255)

                                                  tttGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACtttt                                          <  1:3923455/91‑1 (MQ=255)

                                                   ttGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACttttt                                         <  2:1380955/91‑1 (MQ=255)

                                                     gTATAATAAAAATCGATAAAGAGATTGTTTGTAAAACCCAAACGATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTg                                       <  1:3960460/91‑1 (MQ=255)

                                                      tataATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGt                                      <  1:1614780/91‑1 (MQ=255)

                                                      tataATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGt                                      >  1:1287118/1‑91 (MQ=255)

                                                      tataATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGt                                      >  2:1757471/1‑91 (MQ=255)

                                                              aaaTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATc                              <  2:3560178/91‑1 (MQ=255)

                                                               aaTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCa                             >  2:948927/1‑91 (MQ=255)

                                                               aaTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCa                             <  1:3205831/91‑1 (MQ=255)

                                                               aaTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCa                             <  1:746949/91‑1 (MQ=255)

                                                                 tAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATa                           >  1:1177809/1‑91 (MQ=255)

                                                                   gATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaa                         <  1:2784370/91‑1 (MQ=255)

                                                                   gATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaa                         <  1:1660419/91‑1 (MQ=255)

                                                                    aTAAAGAGTTTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATTTTATGACTTTTTTGTACAAAATCATaaaa                        <  2:3439732/91‑1 (MQ=255)

                                                                    aTAAAGAGATTGTTTGTAAAACCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgt                        <  1:1914672‑M2/91‑69 (MQ=255)

                                                                    aTAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaa                        >  1:1580786/1‑91 (MQ=255)

                                                                    aTAAAGAGATTGTTTGGAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaa                        <  2:3030053/91‑1 (MQ=255)

                                                                    aTAAAGAGATTGTTTGGAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaa                        <  2:3030352/91‑1 (MQ=255)

                                                                     tAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaaa                       >  2:2634938/1‑91 (MQ=255)

                                                                     tAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaaa                       <  1:1284284/91‑1 (MQ=255)

                                                                     tAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaaa                       <  1:2137170/91‑1 (MQ=255)

                                                                     tAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaaa                       >  2:680062/1‑91 (MQ=255)

                                                                      aaaGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAAt                      <  2:3734841/91‑1 (MQ=255)

                                                                       aaGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATa                     <  1:2943673/91‑1 (MQ=255)

                                                                        agagATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAg                    <  2:3319777/91‑1 (MQ=255)

                                                                        agagATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAg                    <  2:2354115/91‑1 (MQ=255)

                                                                        agagATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAg                    <  2:3779209/91‑1 (MQ=255)

                                                                          agaTTGTTTGTAAAACCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattcta                  <  1:601338‑M2/91‑75 (MQ=255)

                                                                          agaTTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCa                  >  1:2391789/1‑91 (MQ=255)

                                                                             ttgtttgtAAAACCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatac               <  2:1725509‑M2/91‑78 (MQ=255)

                                                                             ttgtttgtAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAAt               <  2:1557896/91‑1 (MQ=255)

                                                                                tttgtAAAACCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatacttt            <  1:3542805‑M2/91‑81 (MQ=255)

                                                                                tttgtAAA‑CCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatacttta           <  2:293622‑M2/91‑82 (MQ=255)

                                                                                 ttgtAAAACCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatacttta           <  2:3587739‑M2/91‑82 (MQ=255)

                                                                                 ttgtAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATa           <  2:549199/91‑1 (MQ=255)

                                                                                   gtAAAACCCAAACAATCCCCAATAAATTTATGCCTAAACTTCTAATCTTATGACTCTTTTGTACACAATCCTAATAATAGCAAACGATAcc         >  2:1055775/1‑90 (MQ=255)

                                                                                    tAAAGCCCAAACAAGCCCCAATAAATATATGCCTAAACTTCTAATCTTATGGCTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTg        <  2:1674024/91‑1 (MQ=255)

                                                                                    tAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTg        <  2:3956222/91‑1 (MQ=255)

                                                                                    tAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTg        >  1:2705065/1‑91 (MQ=255)

                                                                                    tAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTg        <  2:1101847/91‑1 (MQ=255)

                                                                                     aaaaCCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTGa       <  2:2604302/91‑1 (MQ=255)

                                                                                      aaaCCCAAACAATCCCCAATAAATATATGCCTACACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTGAt      <  1:3239717/91‑1 (MQ=255)

                                                                                       aaCCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTGAtt     <  1:9285/91‑1 (MQ=255)

                                                                                         cccaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcaaatgtattctatactttaagttggct   <  2:3422648‑M2/91‑90 (MQ=255)

ACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATACTGATTAAG  >  USA300TCH1516_ALE/1772702‑1772882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.