| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1772785 | 176 (0.860) | 19 (0.110) | 13/142 | NT | 10.4% | coding (148/816 nt) | USA300HOU_RS08850 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1772792 | 172 (0.950) | coding (141/816 nt) | USA300HOU_RS08850 | hypothetical protein | |||||
Only 100 of 293 total aligned reads displayed.
TCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATAC > USA300TCH1516_ALE/1772695‑1772874 | cAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGAttgtttgt > 1:68537/1‑91 (MQ=255) aGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTa < 1:1035487/91‑1 (MQ=255) aGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTa < 2:2731646/91‑1 (MQ=255) aGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTa < 2:1344155/91‑1 (MQ=255) gCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTaa > 1:2770184/1‑91 (MQ=255) cAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTaaaa < 1:2492061/91‑1 (MQ=255) aCTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAAcc > 1:3008609/1‑91 (MQ=255) cTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCc > 1:416513‑M2/1‑90 (MQ=255) ttAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCca > 2:3480903‑M2/1‑89 (MQ=255) ttAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCca > 1:2679389‑M2/1‑89 (MQ=255) tAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGggttttacaa < 2:3587739‑M1/91‑11 (MQ=255) tAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaa > 1:170142‑M2/1‑88 (MQ=255) aaaGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGggttttacaaa < 1:3542805‑M1/91‑12 (MQ=255) aaaGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaa > 2:844352‑M2/1‑87 (MQ=255) aaGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaac > 1:3203778‑M2/1‑86 (MQ=255) aaGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaac > 1:2248288‑M2/1‑86 (MQ=255) aaGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaac > 2:2886902‑M2/1‑86 (MQ=255) aGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaaca > 1:3606242‑M2/1‑85 (MQ=255) aGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaaca < 2:1341664‑M2/91‑7 (MQ=255) gTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaacaa < 1:455903‑M2/91‑8 (MQ=255) tataGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGATTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaacaat < 2:1498594‑M2/91‑9 (MQ=255) taGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGggttttacaaacaatct < 1:601338‑M1/91‑18 (MQ=255) taGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATcc > 1:913752/1‑91 (MQ=255) taGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATcc < 2:758667/91‑1 (MQ=255) aGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGCTAAAGAGATTGTTTGTAAAACCCAAACAATccc > 1:3234309/1‑91 (MQ=255) aaTACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCa > 1:1210561/1‑91 (MQ=255) aTACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaa < 2:29735/91‑1 (MQ=255) aTACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaa < 2:1563991/91‑1 (MQ=255) aCATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGggttttacaaacaatctctttat < 1:1914672‑M1/91‑24 (MQ=255) cATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaataa > 1:2153780/1‑91 (MQ=255) tCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaataaat > 1:2419996/1‑91 (MQ=255) cTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCaataaata > 2:3653284/1‑91 (MQ=255) tGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAatat < 1:1366260/91‑1 (MQ=255) gAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAatata > 1:2814773/1‑91 (MQ=255) aaaTAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAatatat > 1:1943827/1‑91 (MQ=255) aaTAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATg > 2:2262994/1‑91 (MQ=255) aGATCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATCTATGCCt > 2:3501768/1‑91 (MQ=255) aGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATGGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCt < 1:3524509/91‑1 (MQ=255) cccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTaaa > 1:3759716/1‑91 (MQ=255) ccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGCTAAAGAGATTGTTCGTAAAACCCAAACGATCCCCAATAAATATATGCCTAAAc > 1:3680531/1‑91 (MQ=255) ccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTCAAACCCAAACAATCCCCAATAAATATATGCCTAAAc > 2:3124944/1‑91 (MQ=255) ccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAAc > 1:308141/1‑91 (MQ=255) ccTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAAc > 2:1404640/1‑91 (MQ=255) cTAATGGAATATGTCTAGTTTGTATAATAAAAATCGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACt < 2:2565066/91‑1 (MQ=255) cTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACt > 1:357785/1‑91 (MQ=255) cTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACt < 1:1929302/91‑1 (MQ=255) cTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACt > 2:3440040/1‑91 (MQ=255) tAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACtt < 2:3491533/91‑1 (MQ=255) aaTGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTc < 2:2933143/91‑1 (MQ=255) tGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGggttttacaaacaatctctttatctatttttattatacaaact < 1:1777370‑M1/91‑44 (MQ=255) tGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCcaaacaatctctttatctatttttattataccaact < 1:2524519‑M2/91‑37 (MQ=255) tGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTa > 2:3418864/1‑91 (MQ=255) ggAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTaa < 1:1186926/91‑1 (MQ=255) aaTATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATc > 2:1731227/1‑91 (MQ=255) aaTATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATc > 2:1996905/1‑91 (MQ=255) atatGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCt > 2:2301699/1‑91 (MQ=255) tatGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCtt < 2:1783400/91‑1 (MQ=255) atGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTa > 2:477988/1‑91 (MQ=255) atGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTa < 1:1001374/91‑1 (MQ=255) tGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTAt < 1:869789/91‑1 (MQ=255) gTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATg > 2:1488480/1‑91 (MQ=255) tAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACt > 2:3052023/1‑91 (MQ=255) tAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACt > 2:1711139/1‑91 (MQ=255) tAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACt < 1:3214646/91‑1 (MQ=255) gTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACttt > 1:2357385/1‑91 (MQ=255) tttGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACtttt < 1:3923455/91‑1 (MQ=255) tGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACtttttt < 2:1276208/91‑1 (MQ=255) gTATAATAAAAATCGATAAAGAGATTGTTTGTAAAACCCAAACGATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTg < 1:3960460/91‑1 (MQ=255) tataATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGt > 2:1670049/1‑91 (MQ=255) aataaAAATAGATAAAGAGATTGTTTGggttttacaaacaatctctttatctatttttattatacaaactagacatattccattagggtct < 1:2429386‑M1/91‑65 (MQ=255) aataaAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACa < 1:2072078/91‑1 (MQ=255) ataaAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACaa > 2:3215647/1‑91 (MQ=255) ataaAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACaa > 1:1607625/1‑91 (MQ=255) aaaaTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAAt > 2:2124502/1‑91 (MQ=255) aaTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCa > 2:948927/1‑91 (MQ=255) aaTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCa < 2:195510/91‑1 (MQ=255) aaTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCa < 1:746949/91‑1 (MQ=255) aTAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCAt > 1:169756/1‑91 (MQ=255) gATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaa > 1:1310547/1‑91 (MQ=255) gATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaa < 1:2784370/91‑1 (MQ=255) aTAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaa > 1:1580786/1‑91 (MQ=255) aTAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaa > 2:3545217/1‑91 (MQ=255) aTAAAGAGATTGTTTGGAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaa < 2:3030336/91‑1 (MQ=255) tAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATaaaaa > 2:2634938/1‑91 (MQ=255) aaGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATa < 1:1146313/91‑1 (MQ=255) aaGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATa < 1:2943673/91‑1 (MQ=255) agagATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAg < 2:3779209/91‑1 (MQ=255) agagATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAg < 2:2354115/91‑1 (MQ=255) gaTTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCaa > 2:40528/1‑91 (MQ=255) gaTTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCaa < 2:56650/91‑1 (MQ=255) aTTGTTTGggttttacaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctata > 1:3202415‑M1/1‑8 (MQ=255) aTTGTTTGggttttacaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctata > 1:1639401‑M1/1‑8 (MQ=255) ttgtttgtAAAACCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatac < 2:1725456‑M2/91‑78 (MQ=255) ttGTTTGggttttacaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatac < 1:1499411‑M1/91‑85 (MQ=255) tGTTTGggttttacaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatact < 2:2851615‑M1/91‑86 (MQ=255) tttGggttttacaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatacttt > 2:3809053‑M1/1‑4 (MQ=255) ttgtAAAACCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatacttta < 1:958842‑M2/91‑82 (MQ=255) ttgtAAAACCcaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctataattta < 2:1385964‑M2/91‑82 (MQ=255) ttGggttttacaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatacttta > 1:171741‑M1/1‑3 (MQ=255) tGggttttacaaacaatctctttatctatttttattatacaaactagacatattccattagggtctatttcagatgtattctatactttaa > 1:3204548‑M1/1‑2 (MQ=255) | TCAGCCAACTTAAAGTATAGAATACATCTGAAATAGACCCTAATGGAATATGTCTAGTTTGTATAATAAAAATAGATAAAGAGATTGTTTGTAAAACCCAAACAATCCCCAATAAATATATGCCTAAACTTCTAATCTTATGACTTTTTTGTACAAAATCATAAAAATAGCAAATGATAC > USA300TCH1516_ALE/1772695‑1772874 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |