| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1775193 | 141 (0.690) | 13 (0.070) | 9/142 | NT | 8.8% | intergenic (‑86/+68) | engB/clpX | putative GTP‑binding protein EngB/ATP‑dependent Clp protease ATP‑binding subunit ClpX |
| ? | USA300TCH1516_ALE | = 1775229 | 146 (0.810) | intergenic (‑122/+32) | engB/clpX | putative GTP‑binding protein EngB/ATP‑dependent Clp protease ATP‑binding subunit ClpX | |||||
GATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1775095‑1775193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagctccAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < USA300TCH1516_ALE/1775229‑1775140 GATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑A < 1:2858690/91‑1GATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑A < 1:272772/91‑1 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAA < 1:562229/91‑1 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAA < 1:562023/91‑1 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAA > 1:371104/1‑91 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAA < 1:3231823/91‑1 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAA < 2:351847/91‑1 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAA < 2:2986497/91‑1 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAA < 2:2986605/91‑1 TTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAA > 1:2677997/1‑91 TAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAA < 1:777965/91‑1 AACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAG > 1:632422/1‑91 AACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAG < 2:1987147/91‑1 AACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAG > 1:2098353/1‑91 ACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGC > 2:2628413/1‑91 ACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGC < 2:2081079/91‑1 ACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGC > 2:444499/1‑91 ACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTGTCGGTATACATTATAA‑‑‑‑‑AAAAGC > 2:3179248/1‑91 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCT < 1:1176111/91‑1 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCT < 1:2032533/91‑1 CTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCT > 2:152789/1‑91 TTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTC > 1:2613343/1‑91 TTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTC > 1:2613355/1‑91 TTCATTTTATATCCTCACTTTTTTATATTCTCTTTCGATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCC < 2:3109690/91‑1 TTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCC > 2:3791143/1‑91 TTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCC > 2:655321/1‑91 TTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCC < 1:920768/91‑1 TTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCC > 2:160404/1‑91 TTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCC > 2:3267838/1‑91 TCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACT < 1:1350254/91‑1 CTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTT < 1:3823173/91‑1 CTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTT < 1:2219164/91‑1 TTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTT < 1:1450684/91‑1 TTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTT < 1:2056899/91‑1 TTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAGATAGTTTAACTTTG < 2:3360763/91‑1 TTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTG < 1:786687/91‑1 CAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGAT < 1:1129247/91‑1 TCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAGTGAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGA < 1:2932314/91‑1 TCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAAAAGTGAAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGA < 1:2932570/91‑1 TCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGA < 1:444774/91‑1 CTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAG < 1:1990458/91‑1 TACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGC < 2:2879895/91‑1 gtgtAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATAT < 1:3555172/87‑1 AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAAT < 2:1113137/91‑1 AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAAT < 2:121045/91‑1 AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAAT < 2:1113044/91‑1 AAAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAAT > 2:633761/1‑91 AAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATTATGTATACCGAAAGGTTCAAATATTATATAATG > 2:586466/1‑91 AAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATG > 1:1828192/1‑91 AAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATG > 2:2069561/1‑91 AAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATG > 1:32260/1‑91 AAAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATG > 2:294223/1‑91 AAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGG > 2:1929341/1‑91 AAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGG > 2:554033/1‑91 AAGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGG > 2:365495/1‑91 AGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGT > 1:46233/1‑91 AGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGT < 1:188669/91‑1 AGCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGT > 2:3492253/1‑91 GCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTA > 1:394181/1‑91 GCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTA > 1:2413830/1‑91 GCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTA < 2:553413/91‑1 GCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTA < 1:1446456/91‑1 GCTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATAATATAATGGTA < 2:427681/91‑1 CTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAG > 1:3274374/1‑91 CTCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAG > 2:1750501/1‑91 CTCCAATCAAAGTTGACGCTCAAATAGTTTAACGTTGATCGGAGCTTTTTGATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAG < 2:575084/91‑1 TCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGA < 2:2422876/91‑1 TCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGA < 1:2183997/91‑1 TCCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGA < 1:2398999/91‑1 CCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAA > 1:786630/1‑91 CCAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAA > 2:3329366/1‑91 CAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < 2:2280320/91‑1 CAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < 1:745489/91‑1 CAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < 2:1969197/91‑1 CAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < 2:1968994/91‑1 CAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < 1:1109056/91‑1 CAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < 1:3722108/91‑1 CAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < 1:933827/91‑1 GATTAACTTTCATTTTATATCCTCACTTTTTTATATTCTCTTTCAATTCTACCATTATATAATATTTGAACCTTTCGGTATACATTATAA‑‑‑‑‑AAAAGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1775095‑1775193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagctccAATCAAAGTTGACGCTCAAATAGTTTAACTTTGATCGGAGCTTTTTTATAATGTATACCGAAAGGTTCAAATATTATATAATGGTAGAAT < USA300TCH1516_ALE/1775229‑1775140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |