| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1782814 = | 186 (0.910) | 9 (0.050) | 7/146 | NT | 5.5% | intergenic (‑97/+329) | lysP_2/thrS | Lysine‑specific permease/Threonine‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | 1782851 = | 142 (0.760) | intergenic (‑134/+292) | lysP_2/thrS | Lysine‑specific permease/Threonine‑‑tRNA ligase | |||||
TTTCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1782910‑1782814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccactttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTTA > USA300TCH1516_ALE/1782851‑1782940 TTTCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGC < 1:315312/91‑1TTTCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGC < 2:2674267/91‑1 TCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCA > 1:2829157/1‑91 TCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCA < 1:426548/91‑1 TCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCA > 1:167462/1‑91 TCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTATCATATCTTAAAGGTATGTAGCCA > 2:3669403/1‑91 TCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTAGCATATCTTAAAGGTATGTAGCCA > 2:3669415/1‑91 CGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCAC > 2:2284564/1‑91 CGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCAC < 2:1835925/91‑1 CGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCAC < 2:2277876/91‑1 GAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACT < 1:830317/91‑1 GAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACT > 2:385016/1‑91 GAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACT < 1:539387/91‑1 AATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTT < 1:2433725/91‑1 AATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTT < 1:759455/91‑1 AATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTT > 1:3812198/1‑91 AATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGAGAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTT < 2:3046937/91‑1 ATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTTT < 1:104087/91‑1 ATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTTT > 1:2457598/1‑91 ATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTTT > 1:1867901/1‑91 GAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCA < 1:3926037/91‑1 TGGTTGCATATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGA > 1:83578/1‑91 GTTGCATATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAA > 1:2025489/1‑91 TTGCATATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAA > 2:3342449/1‑91 TTGCATATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAA > 1:2667087/1‑91 TGCATATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAAC > 1:3585462/1‑91 TGCATATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAAC > 1:932250/1‑91 TGCATATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCATATTCGAAAAC > 1:3582901/1‑91 TATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTC > 2:2054770/1‑91 ATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATA > 1:2054834/1‑91 CCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTAT < 2:481919/91‑1 CCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTAT > 1:10642/1‑91 CCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTAT < 1:876917/91‑1 CCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTAT > 1:3228899/1‑91 ACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGG > 1:679059/1‑91 ACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGG > 1:3325064/1‑91 ACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGG > 1:3324987/1‑91 CTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGT > 2:1558457/1‑91 TTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTT > 2:1959896/1‑91 TTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTT > 2:1959552/1‑91 TTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTT > 2:2449234/1‑91 TTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTT > 2:2449280/1‑91 TTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTT > 2:2531718/1‑91 TTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTT > 2:1295599/1‑91 TGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTTA > 1:689744/1‑91 TGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTTA > 2:808965/1‑91 TTTCGAATAGGAACTGTACTGTCACAGAATGTGATGTGCTACCTTATATAGATAATTGCCAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1782910‑1782814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccactttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTTA > USA300TCH1516_ALE/1782851‑1782940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |