BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1782814 =	186 (0.910)	9 (0.050)	7/146	NT	5.5%	intergenic (‑97/+329)	lysP_2/thrS	Lysine‑specific permease/Threonine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	1782851 =	142 (0.760)	9 (0.050)	7/146	NT	5.5%	intergenic (‑134/+292)	lysP_2/thrS	Lysine‑specific permease/Threonine‑‑tRNA ligase

Only 100 of 228 total aligned reads displayed.

CTTTATTCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTTAT  >  USA300TCH1516_ALE/1782761‑1782941

 tttATTCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTgg                                                                                           >  1:775981/1‑91 (MQ=255)

   tATTCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCa                                                                                         <  1:499761/91‑1 (MQ=255)

   tATTCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCa                                                                                         <  1:3599140/91‑1 (MQ=255)

   tATTCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCa                                                                                         <  1:3557639/91‑1 (MQ=255)

    aTTCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCaa                                                                                        >  2:1567604/1‑91 (MQ=255)

    aTTCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCaa                                                                                        >  2:1380328/1‑91 (MQ=255)

      tCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAAtt                                                                                      >  1:2795503/1‑91 (MQ=255)

         cTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATc                                                                                   >  2:1437542/1‑91 (MQ=255)

           ttCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCta                                                                                 <  1:476480/91‑1 (MQ=255)

           ttCATACCCTTTCTTACAGAACATAGTGATAGTAAAAGTAAAAAAGTGGCAACATACCTTTAAGATATGCGACCACTTTGGCAATTATCta                                                                                 <  2:2057768/91‑1 (MQ=255)

            tCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCtat                                                                                <  1:2468929/91‑1 (MQ=255)

              aTACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCtatat                                                                              <  2:260015/91‑1 (MQ=255)

              aTACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCtatat                                                                              <  2:1542709/91‑1 (MQ=255)

                 cccTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAg                                                                           >  1:167995/1‑91 (MQ=255)

                  ccTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAgg                                                                          <  2:3234132/91‑1 (MQ=255)

                  ccTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAgg                                                                          <  1:2743607/91‑1 (MQ=255)

                   cTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGt                                                                         <  2:334702/91‑1 (MQ=255)

                   cTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGt                                                                         <  1:2259243/91‑1 (MQ=255)

                       tttACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGca                                                                     <  1:283564/91‑1 (MQ=255)

                         tACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGcaca                                                                   <  1:671765/91‑1 (MQ=255)

                         tACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGcaca                                                                   <  1:1408931/91‑1 (MQ=255)

                          aCAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGcacat                                                                  <  2:882467/91‑1 (MQ=255)

                           cAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGcacatc                                                                 >  1:441144/1‑91 (MQ=255)

                             gAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGcacatcac                                                               >  1:3935102/1‑91 (MQ=255)

                             gAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGcacatcac                                                               >  1:3134045/1‑91 (MQ=255)

                              aaCATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGcacatcaca                                                              >  1:1150106/1‑91 (MQ=255)

                                cATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACAtt                                                            >  2:1870323/1‑91 (MQ=255)

                                  tAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCt                                                          >  2:3144815/1‑91 (MQ=255)

                                  tAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCt                                                          >  1:2411551/1‑91 (MQ=255)

                                  tAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCCATATAAGGTAGCACATCACATTCt                                                          >  2:3688796/1‑91 (MQ=255)

                                  tAGTGATATTAAAAGTAAAAAAGTGGCTACAGACCGTTAAGATATGCAACTACTTTGGCAATTGTCTATAGAAGCTAGAGCATCACATTCt                                                          <  2:1370881/91‑1 (MQ=255)

                                        tatTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAAGTATCTATATAAGGTAGCACATCACATTCTGTGaca                                                    <  2:386003/91‑1 (MQ=255)

                                         atTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCTCTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacag                                                   <  2:246465/91‑1 (MQ=255)

                                         atTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacag                                                   <  2:3234757/91‑1 (MQ=255)

                                         atTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacag                                                   >  1:1609109/1‑91 (MQ=255)

                                         atTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacag                                                   <  2:1467691/91‑1 (MQ=255)

                                         atTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacag                                                   <  1:2316512/91‑1 (MQ=255)

                                         atTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacag                                                   >  2:3826942/1‑91 (MQ=255)

                                          ttAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacagt                                                  >  1:2999896/1‑91 (MQ=255)

                                          ttAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacagt                                                  >  2:957812/1‑91 (MQ=255)

                                          ttAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacagt                                                  >  2:2685696/1‑91 (MQ=255)

                                            aaaaGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacagtac                                                >  2:2893058/1‑91 (MQ=255)

                                            aaaaGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacagtac                                                >  1:2758687/1‑91 (MQ=255)

                                              aaGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacagtacag                                              <  2:759880/91‑1 (MQ=255)

                                              aaGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGacagtacag                                              <  2:2042413/91‑1 (MQ=255)

                                                 tgccAAAGTGGTTGCATATCTTAAAGGTATGTAGCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTc                                           <  1:3926037‑M1/87‑1 (MQ=255)

                                                 tAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTc                                           <  2:569473/91‑1 (MQ=255)

                                                  aaaaaaGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTcc                                          <  2:2349471/91‑1 (MQ=255)

                                                   aaaaaGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCACTCATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCt                                         >  2:734089/1‑91 (MQ=255)

                                                     AAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTAt                                       <  1:104087‑M1/91‑1 (MQ=255)

                                                     AAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTAt                                       >  1:1867901‑M1/1‑91 (MQ=255)

                                                       AGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTc                                     <  1:539387‑M1/91‑1 (MQ=255)

                                                        GTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCg                                    <  2:2277876‑M1/91‑1 (MQ=255)

                                                         TGGCTACATACCTTTAAGATATGATACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGa                                   >  2:3669403‑M1/1‑91 (MQ=255)

                                                           GCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGaaa                                 <  1:315312‑M1/91‑1 (MQ=255)

                                                            ttgcatatcttaaaggtatgtagccactttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGaaaa                                >  2:3342449‑M2/31‑91 (MQ=255)

                                                            cTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGtaaa                                >  1:3121002/1‑91 (MQ=255)

                                                            cTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGaaaa                                >  1:2067458/1‑91 (MQ=255)

                                                             tgcatatcttaaaggtatgtagccactttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCATATTCGAAAAc                               >  1:3582901‑M2/30‑91 (MQ=255)

                                                             tACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAAc                               >  1:245140/1‑91 (MQ=255)

                                                             tACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAAc                               <  1:1505543/91‑1 (MQ=255)

                                                              aCATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACt                              >  2:1530306/1‑91 (MQ=255)

                                                              aCATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACt                              <  2:1797690/91‑1 (MQ=255)

                                                                    cTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCa                        >  2:2254319/1‑91 (MQ=255)

                                                                     tttAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCaa                       <  2:3316204/91‑1 (MQ=255)

                                                                     tttAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCaa                       >  1:1096459/1‑91 (MQ=255)

                                                                     tttAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCaa                       >  1:1096910/1‑91 (MQ=255)

                                                                      ttAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAAt                      >  2:3235409/1‑91 (MQ=255)

                                                                      ttAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAAt                      >  2:3123711/1‑91 (MQ=255)

                                                                      ttAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAAt                      >  1:414918/1‑91 (MQ=255)

                                                                       tAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATa                     <  1:2105173/91‑1 (MQ=255)

                                                                         aGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTAGTCGAAAACTGTCCCAATAGa                   <  1:2984036/91‑1 (MQ=255)

                                                                         aGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGGGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGa                   <  1:3340006/91‑1 (MQ=255)

                                                                           atatGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGata                 <  1:1258476/91‑1 (MQ=255)

                                                                           atatGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGata                 >  1:2133758/1‑91 (MQ=255)

                                                                             atgtagccactttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGAtata               >  1:2054834‑M2/14‑91 (MQ=255)

                                                                             atGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGAtata               <  1:3404969/91‑1 (MQ=255)

                                                                             atGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGAtata               >  2:1045014/1‑91 (MQ=255)

                                                                              tGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATaa              >  2:1225551/1‑91 (MQ=255)

                                                                              tGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATaa              >  2:2209314/1‑91 (MQ=255)

                                                                              tGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATaa              >  2:3051030/1‑91 (MQ=255)

                                                                              tGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATaa              >  1:2021088/1‑91 (MQ=255)

                                                                                cAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAAtt            >  1:2874005/1‑91 (MQ=255)

                                                                                cAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAAtt            <  1:3720307/91‑1 (MQ=255)

                                                                                 aaCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAAttt           <  2:1856126/91‑1 (MQ=255)

                                                                                  aCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTa          >  2:14279/1‑91 (MQ=255)

                                                                                  aCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTa          <  1:2379561/91‑1 (MQ=255)

                                                                                  aCCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTa          <  1:2338071/91‑1 (MQ=255)

                                                                                   ccactttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTAt         >  1:3228899‑M2/8‑91 (MQ=255)

                                                                                   ccactttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTAt         <  1:876917‑M2/84‑1 (MQ=255)

                                                                                   ccactttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTAt         <  2:481919‑M2/84‑1 (MQ=255)

                                                                                     actttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATgg       >  1:3325064‑M2/6‑91 (MQ=255)

                                                                                       tttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGtt     >  2:1959896‑M2/4‑91 (MQ=255)

                                                                                        ttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGttt    >  2:2449280‑M2/3‑91 (MQ=255)

                                                                                        ttGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGttt    >  2:2531718‑M2/3‑91 (MQ=255)

                                                                                         tGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTTa   >  2:808965‑M2/2‑91 (MQ=255)

                                                                                         tGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTTa   >  1:689744‑M2/2‑91 (MQ=255)

                                                                                          ggCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTtat  >  2:1114582/1‑91 (MQ=255)

                                                                                          ggCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTtat  >  2:2729244/1‑91 (MQ=255)

                                                                                          ggCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTtat  >  2:2822727/1‑91 (MQ=255)

CTTTATTCACTTTCATACCCTTTTTTACAGAACATAGTGATATTAAAAGTAAAAAAGTGGCTACATACCTTTAAGATATGCAACCACTTTGGCAATTATCTATATAAGGTAGCACATCACATTCTGTGACAGTACAGTTCCTATTCGAAAACTGTCCCAATAGATATAATTTATGGTTTAT  >  USA300TCH1516_ALE/1782761‑1782941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.