| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1789630 = | 223 (1.090) | 12 (0.070) | 8/138 | NT | 6.6% | intergenic (‑111/+59) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase |
| ? | USA300TCH1516_ALE | 1789673 = | 149 (0.850) | intergenic (‑154/+16) | gapA2/coaE | Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase | |||||
GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1789730‑1789630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTA > USA300TCH1516_ALE/1789673‑1789762 GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTA > 1:907349/1‑91GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTA > 2:3600023/1‑91GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTA > 2:1778507/1‑91GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTA > 2:223429/1‑91GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTA < 2:2323591/91‑1GAAGATTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTA < 2:1688809/91‑1 AGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAG > 2:1435364/1‑91 AGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAG > 2:1225303/1‑91 AGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAG > 1:561442/1‑91 AGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAG > 2:1748225/1‑91 AGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAG > 2:1748518/1‑91 GGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGT < 2:264906/91‑1 GGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGT > 1:2260109/1‑91 GGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGT < 2:275470/91‑1 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTA < 1:3734563/91‑1 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTA < 1:993861/91‑1 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTA < 1:990770/91‑1 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTA > 1:2203692/1‑91 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTA > 2:1852052/1‑91 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGAATGTAAGTA < 2:184788/91‑1 GTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACATACGCGTTGATGTATGTAAGTA > 1:549197/1‑91 TTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAA < 2:1529240/91‑1 TTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAA < 2:1529241/91‑1 TTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAA < 2:1529363/91‑1 TATATTGAACAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAAT > 2:108384/1‑91 TATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAAT < 2:3096104/91‑1 TATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAAT < 1:1666348/91‑1 TATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAAT < 2:2274582/91‑1 ATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATG < 1:3538094/91‑1 ATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATG < 2:1176230/91‑1 ATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATG < 2:1178339/91‑1 ATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATG < 1:3276281/91‑1 TATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGA < 2:3950041/91‑1 TATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGA < 1:2666536/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 2:251808/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 2:986274/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 2:986264/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC < 2:3948345/91‑1 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC > 1:1705904/1‑91 ATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGAC > 1:2542972/1‑91 TTGAAAAGCCGAATTACGGAGAAGAAGATTAGTATTACACTATAGATAAGTCAGTACTTTACGTACGCGTTGATGTATGTAAGTAATGACT < 1:3163437/91‑1 TTGAAAAGCCGAATTACGGAGAAGAAGATTACTATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGACT < 1:3163610/91‑1 AGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAA > 1:2476621/1‑91 GTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAAT > 1:3899135/1‑91 CATTACTTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATAT > 1:1999140/1‑91 TACTTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAC > 2:2187503/1‑91 ACTTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACC > 2:391928/1‑91 ACTTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACC > 2:391929/1‑91 ACTTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACC > 2:1511489/1‑91 TTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTT > 2:326627/1‑91 TTTACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTT > 1:2624124/1‑91 TACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCT > 1:1796559/1‑91 TACGTACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCT > 2:2318135/1‑91 ACGCGTTGATGTATGTAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTC > 2:1817283/1‑91 AAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGG < 2:917484/91‑1 AAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGG > 2:1907542/1‑91 AAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGG < 2:917541/91‑1 AGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGT < 2:3393791/91‑1 GTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTT < 1:1662202/91‑1 GTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTT > 2:3728105/1‑91 GTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTT < 1:1699987/91‑1 GTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTT > 1:855494/1‑91 tacTGACTTATTTATAGTGTAATATTACTCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTT > 2:467455/4‑91 AATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTT < 2:1662068/91‑1 ATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTG > 1:3488989/1‑91 ATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTG > 1:3621074/1‑91 ATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTG < 2:1638344/91‑1 TGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAGGGTTTTGT > 2:202832/1‑91 TGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGT > 1:2119130/1‑91 TGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGT > 2:3247056/1‑91 GACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTT < 1:29092/91‑1 ACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTT > 2:2095964/1‑91 ACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTT > 2:590335/1‑91 CTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTT > 1:513106/1‑91 TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTA < 1:1235223/91‑1 TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTA < 1:317591/91‑1 TTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCCCTCAAGGTTTTGTTTTA > 1:3466719/1‑91 TTATTCATAGAGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTCCTTCTTCTAACAATCTCTCACGGTTTTGTTCTA > 2:1369347/1‑91 GAAGGTTATATTGAAAAGCCGAATTACGGAGAAGAAGATTAATATTACACTATAAATAAGTCATTACTTTACGTACGCGTTGATGTATGTAAGTAATGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1789730‑1789630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTA > USA300TCH1516_ALE/1789673‑1789762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |