BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1789630 =	223 (1.090)	12 (0.070)	8/138	NT	6.6%	intergenic (‑111/+59)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase
*	?	USA300TCH1516_ALE	1789673 =	149 (0.850)	12 (0.070)	8/138	NT	6.6%	intergenic (‑154/+16)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase

Only 100 of 258 total aligned reads displayed.

ATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAA  >  USA300TCH1516_ALE/1789583‑1789763

 tttGAAAGCGTTTTCCGTTTATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACtta                                                                                           >  1:3741588/1‑91 (MQ=255)

  ttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttat                                                                                          >  1:2361660/1‑91 (MQ=255)

   tGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatt                                                                                         <  2:3076388/91‑1 (MQ=255)

    gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt                                                                                        <  2:2358941/91‑1 (MQ=255)

    gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt                                                                                        <  2:1518275/91‑1 (MQ=255)

      aaGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatctat                                                                                      >  1:3062242/1‑91 (MQ=255)

      aaGCGTTTTCCGTTGATTTATCTATCCTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                                                                      >  2:3138638/1‑91 (MQ=255)

       aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                                                                     >  1:3782321/1‑91 (MQ=255)

        gCGTTTTCTGTTGATGTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAg                                                                                    <  2:3429521/91‑1 (MQ=255)

        gCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAg                                                                                    >  2:3216140/1‑91 (MQ=255)

          gTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtg                                                                                  >  1:3649105/1‑91 (MQ=255)

           ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                                                                 <  2:1219947/91‑1 (MQ=255)

             ttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTaa                                                                               >  2:1997615/1‑91 (MQ=255)

              tCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAat                                                                              <  1:2888300/91‑1 (MQ=255)

               ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata                                                                             <  1:2213461/91‑1 (MQ=255)

               ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata                                                                             <  2:207778/91‑1 (MQ=255)

               ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata                                                                             <  1:1336665/91‑1 (MQ=255)

                cGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAatat                                                                            <  2:158147/91‑1 (MQ=255)

                   tGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTaa                                                                         >  2:2928993/1‑91 (MQ=255)

                     atttatttATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtc                                                                       <  2:1462694/91‑1 (MQ=255)

                       ttatgtatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtctt                                                                     <  2:802095/91‑1 (MQ=255)

                        tatttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttc                                                                    >  2:607483/1‑91 (MQ=255)

                            tatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                                                                >  2:580787/1‑91 (MQ=255)

                            tatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                                                                <  1:728015/91‑1 (MQ=255)

                             atCTTTTTTATAGAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTtctc                                                               <  2:3290028/91‑1 (MQ=255)

                              tCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTcc                                                              >  2:3445601/1‑91 (MQ=255)

                              tCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTcc                                                              >  2:2813212/1‑91 (MQ=255)

                              tCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTcc                                                              <  1:1771119/91‑1 (MQ=255)

                               cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCg                                                             <  1:2565279/91‑1 (MQ=255)

                               cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCg                                                             <  1:1560826/91‑1 (MQ=255)

                                ttttttATAAAAAATAGTCATTACTTACATACATCATCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                            <  2:3567989/91‑1 (MQ=255)

                                ttttttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                            <  1:1807132/91‑1 (MQ=255)

                                tttttaATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                                                            <  2:2523390/91‑1 (MQ=255)

                                  ttttATAAAAAATAGTCATTACTTTCATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTaa                                                          >  2:1035797/1‑91 (MQ=255)

                                   tttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt                                                         <  2:1463696/91‑1 (MQ=255)

                                   tttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt                                                         <  2:125674/91‑1 (MQ=255)

                                      ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAATTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                                      >  2:3048419/1‑91 (MQ=255)

                                      ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg                                                      <  2:979270/91‑1 (MQ=255)

                                         aaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCt                                                   <  1:464344/91‑1 (MQ=255)

                                         aaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCt                                                   >  1:2844645/1‑91 (MQ=255)

                                         aaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCt                                                   >  1:1610700/1‑91 (MQ=255)

                                          aaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCtt                                                  <  1:2476787/91‑1 (MQ=255)

                                            aaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCtttt                                                <  2:1827113/91‑1 (MQ=255)

                                             aTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTc                                               >  2:3538385/1‑91 (MQ=255)

                                                GTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAat                                            <  2:3948345‑M1/91‑1 (MQ=255)

                                                 TCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAata                                           <  1:2666536‑M1/91‑1 (MQ=255)

                                                  CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                                          <  1:3276281‑M1/91‑1 (MQ=255)

                                                  CATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAatat                                          <  2:1176230‑M1/91‑1 (MQ=255)

                                                    TTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATaa                                        <  2:1529241‑M1/91‑1 (MQ=255)

                                                     TACTTACATTCATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAc                                       <  2:184788‑M1/91‑1 (MQ=255)

                                                     TACTTACATACATCAACGCGTATGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAc                                       >  1:549197‑M1/1‑91 (MQ=255)

                                                      actttacgtacgcgttgatgtatgtaagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAcc                                      >  2:391928‑M2/37‑91 (MQ=255)

                                                      ACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAAcc                                      <  2:264906‑M1/91‑1 (MQ=255)

                                                       CTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCt                                     >  2:1225303‑M1/1‑91 (MQ=255)

                                                         TACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTc                                   <  2:2323591‑M1/91‑1 (MQ=255)

                                                         TACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTc                                   >  2:223429‑M1/1‑91 (MQ=255)

                                                         TACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTc                                   >  2:1778507‑M1/1‑91 (MQ=255)

                                                            atacatCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACcttcttc                                >  2:2707192/1‑91 (MQ=255)

                                                               catCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCttcttcttc                             >  2:3344110/1‑91 (MQ=255)

                                                               catCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCttcttcttc                             >  1:915936/1‑91 (MQ=255)

                                                               catCAACGCGGACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCttcttcttc                             <  1:1248951/91‑1 (MQ=255)

                                                                 tCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTa                           <  2:1077686/91‑1 (MQ=255)

                                                                 tCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTa                           >  2:2401212/1‑91 (MQ=255)

                                                                 tCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTa                           <  1:1008985/91‑1 (MQ=255)

                                                                  cAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTaa                          >  2:2407305/1‑91 (MQ=255)

                                                                   aaCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                         <  1:1157375/91‑1 (MQ=255)

                                                                   aaCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                         <  2:3659713/91‑1 (MQ=255)

                                                                   aaCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                         >  2:3759431/1‑91 (MQ=255)

                                                                   aaCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAAc                         >  2:716929/1‑91 (MQ=255)

                                                                    aCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACa                        <  1:394222/91‑1 (MQ=255)

                                                                     cgcgTACGTAAAGTAATGACTTATTTATAGTGTAATATTAGTCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACaa                       >  2:3261308/1‑91 (MQ=255)

                                                                      gcgTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAt                      >  1:2802583/1‑91 (MQ=255)

                                                                      gcgTACGTAAAGTAATGACTTATTTATAGTGTAATATCAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAt                      >  1:3330118/1‑91 (MQ=255)

                                                                       cgtacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtc                     >  2:1701369/1‑91 (MQ=255)

                                                                       cgtacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtc                     >  2:847987/1‑91 (MQ=255)

                                                                         tacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctc                   >  2:1736408/1‑91 (MQ=255)

                                                                         tacgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCGAACAAgctc                   >  1:3551532/1‑91 (MQ=255)

                                                                           cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc                 <  2:3166983/91‑1 (MQ=255)

                                                                           cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc                 >  1:1506890/1‑91 (MQ=255)

                                                                           cgtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAAtctctc                 <  1:2752846/91‑1 (MQ=255)

                                                                            gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa                <  2:1137376/91‑1 (MQ=255)

                                                                            gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa                >  1:1853342/1‑91 (MQ=255)

                                                                            gtaAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCa                >  2:2555465/1‑91 (MQ=255)

                                                                             taAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACATTCTTCTTCTAACAATCTCTCaa               >  1:2533185/1‑91 (MQ=255)

                                                                              aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg              <  2:1377936/91‑1 (MQ=255)

                                                                              aaaGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAg              <  1:2133974/91‑1 (MQ=255)

                                                                               aagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAgg             >  2:1907542‑M2/12‑91 (MQ=255)

                                                                               aagtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAgg             <  2:917484‑M2/80‑1 (MQ=255)

                                                                                 gtaatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgtt           <  1:1699987‑M2/82‑1 (MQ=255)

                                                                                  tactgactTATTTATAGTGTAATATTACTCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttt          >  2:467455‑M2/9‑91 (MQ=255)

                                                                                   aatgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgtttt         <  2:1662068‑M2/84‑1 (MQ=255)

                                                                                    atgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttg        >  1:3488989‑M2/7‑91 (MQ=255)

                                                                                    atgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttg        <  2:1638344‑M2/85‑1 (MQ=255)

                                                                                     tgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgt       >  1:2119130‑M2/6‑91 (MQ=255)

                                                                                     tgactTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgt       >  2:3247056‑M2/6‑91 (MQ=255)

                                                                                       actTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgttt     >  2:2095964‑M2/4‑91 (MQ=255)

                                                                                       actTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGgttttgttt     >  2:590335‑M2/4‑91 (MQ=255)

                                                                                         tTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTa   <  1:317591‑M2/90‑1 (MQ=255)

                                                                                         tTATTCATAGAGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTCCTTCTTCTAACAATCTCTCACGGTTTTGTTCTa   >  2:1369347‑M2/2‑91 (MQ=255)

                                                                                          tatttatAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTaa  >  1:2379737/1‑91 (MQ=255)

ATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAATATAACCTTCTTCTTCTAACAATCTCTCAAGGTTTTGTTTTAA  >  USA300TCH1516_ALE/1789583‑1789763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.