BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1789630 =	223 (1.090)	12 (0.070)	8/138	NT	6.6%	intergenic (‑111/+59)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase
*	?	USA300TCH1516_ALE	1789673 =	149 (0.850)	12 (0.070)	8/138	NT	6.6%	intergenic (‑154/+16)	gapA2/coaE	Glyceraldehyde‑3‑phosphate dehydrogenase 2/Dephospho‑CoA kinase

Only 100 of 287 total aligned reads displayed.

TATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAA  >  USA300TCH1516_ALE/1789540‑1789720

taaaacaaaaccttgagggattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataa                                                                                            >  1:3466719‑M1/91‑91 (MQ=255)

taaaacaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataa                                                                                            <  1:1235223‑M1/1‑1 (MQ=255)

taaaacaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataa                                                                                            <  1:317591‑M1/1‑1 (MQ=255)

tATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGCAAGCGTTTTCCGTTGATTTATTTATCTTTTATATAAAAAATa                                                                                            >  1:194770/1‑91 (MQ=255)

tATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATa                                                                                            >  1:133644/1‑91 (MQ=255)

 aTGTGTTATACTTTATGGAATTAGTATAGCATGTTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAg                                                                                           <  1:3361104/91‑1 (MQ=255)

 aTGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAg                                                                                           <  1:1161585/91‑1 (MQ=255)

  tgtgTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGt                                                                                          <  2:3887037/91‑1 (MQ=255)

  aaacaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGt                                                                                          >  2:590335‑M1/89‑91 (MQ=255)

   gtgtTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTc                                                                                         >  1:2594573/1‑91 (MQ=255)

   gtggTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTCTAAAAAATAGTc                                                                                         <  1:3056431/91‑1 (MQ=255)

    tgtTATACTTTATGGACTTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCa                                                                                        <  2:3034975/91‑1 (MQ=255)

    acaaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCa                                                                                        >  1:2119130‑M1/87‑91 (MQ=255)

     gtTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAt                                                                                       >  2:2607435/1‑91 (MQ=255)

     gtTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAt                                                                                       >  2:1908799/1‑91 (MQ=255)

      aaaaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCAtt                                                                                      <  2:1662068‑M1/7‑1 (MQ=255)

       tataCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAtta                                                                                     <  1:3276350/91‑1 (MQ=255)

       tataCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAtta                                                                                     <  1:1128685/91‑1 (MQ=255)

       tataCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAtta                                                                                     <  1:850401/91‑1 (MQ=255)

       tataCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAtta                                                                                     >  2:3629957/1‑91 (MQ=255)

        aaccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCAttac                                                                                    <  1:1699987‑M1/9‑1 (MQ=255)

          ccttgagagattgttagaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCAttactt                                                                                  <  2:917484‑M1/11‑1 (MQ=255)

          aCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttactt                                                                                  <  1:2291271/91‑1 (MQ=255)

          aCTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttactt                                                                                  >  2:3215201/1‑91 (MQ=255)

           atgtATGTAATTAGTATACCATATTAAAAGATATTTGAAAGCGTAATCCGTTTATTTAATTATCTTTCTAATAAAAAATAGTCAttactta                                                                                 <  2:2254419/88‑1 (MQ=255)

            tttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttacttac                                                                                >  2:1322875/1‑91 (MQ=255)

            tttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttacttac                                                                                >  1:941571/1‑91 (MQ=255)

            tttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttacttac                                                                                <  1:415796/91‑1 (MQ=255)

            tttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCAttacttac                                                                                >  2:927077/1‑91 (MQ=255)

             ttATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTATATAAAAAATAGTCATTACTtaca                                                                               <  2:633885/91‑1 (MQ=255)

                  gAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTacatacat                                                                          <  1:1590787/91‑1 (MQ=255)

                          gaagaagaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGcgt                                                                  >  2:1817283‑M1/65‑91 (MQ=255)

                          ataGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgt                                                                  >  2:1794022/1‑91 (MQ=255)

                           taGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATTATAAATAGTCATTACTTACATACATCAACGcgta                                                                 >  2:2538596/1‑91 (MQ=255)

                            aGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtac                                                                >  1:3118852/1‑91 (MQ=255)

                            aGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtac                                                                <  1:3869249/91‑1 (MQ=255)

                             gCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacg                                                               <  1:2193893/91‑1 (MQ=255)

                             gCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacg                                                               >  2:555284/1‑91 (MQ=255)

                             gCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGcgtacg                                                               <  1:710511/91‑1 (MQ=255)

                               atatTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATTTTTATTTTTCATTACTTACATACATTAACGctttcgta                                                             >  2:1637651/1‑91 (MQ=255)

                               agaaggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGcgtacgta                                                             >  1:1796559‑M1/60‑91 (MQ=255)

                                 attatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTaaa                                                           <  1:1820956/91‑1 (MQ=255)

                                  ttatATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAg                                                          >  2:2469185/1‑91 (MQ=255)

                                   ggttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGt                                                         >  2:1511489‑M1/56‑91 (MQ=255)

                                    gttatattgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTa                                                        >  2:2187503‑M1/55‑91 (MQ=255)

                                    atatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTa                                                        >  2:1134572/1‑91 (MQ=255)

                                     tatGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTaa                                                       <  1:2623575/91‑1 (MQ=255)

                                     tatGAAATTTGAAAGCGTTTTCCGTTGAGTTATTTATCTTTGTTATAAAAAATAGTCATGACTTACAGACATCAACGCGTACGTAAAGTaa                                                       <  2:1424609/91‑1 (MQ=255)

                                      atGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAAt                                                      <  1:487188/91‑1 (MQ=255)

                                      atGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGCAAt                                                      >  1:3186201/1‑91 (MQ=255)

                                       tGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATg                                                     >  1:1036282/1‑91 (MQ=255)

                                         attgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGAc                                                   >  1:3899135‑M1/50‑91 (MQ=255)

                                         aaaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGAc                                                   <  2:1381957/91‑1 (MQ=255)

                                         aaaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGAc                                                   <  2:1998957/91‑1 (MQ=255)

                                         aaaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGAc                                                   >  2:2446122/1‑91 (MQ=255)

                                          ttgaaaagccgaattacggagaagaagattaatattacactataaataAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt                                                  >  1:2476621‑M1/49‑91 (MQ=255)

                                          aaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt                                                  <  1:2028480/91‑1 (MQ=255)

                                          aaTTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACt                                                  <  2:3376429/91‑1 (MQ=255)

                                             ttGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttat                                               >  1:2361660/1‑91 (MQ=255)

                                              tGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatt                                              <  1:1458768/91‑1 (MQ=255)

                                              tGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatt                                              <  2:3076408/91‑1 (MQ=255)

                                               gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt                                             >  1:2664636/1‑91 (MQ=255)

                                               gAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattt                                             <  2:1518275/91‑1 (MQ=255)

                                                aaaGCGTTTTCTGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttattta                                            <  1:3580840/91‑1 (MQ=255)

                                                 aaGCGTTTTCCGTTGATTTATCTATCCTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACttatttat                                           >  2:3138638/1‑91 (MQ=255)

                                                  aGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTtata                                          >  1:3782321/1‑91 (MQ=255)

                                                    cGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgt                                        <  1:2535053/91‑1 (MQ=255)

                                                     gTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtg                                       >  1:3649105/1‑91 (MQ=255)

                                                      ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                      <  2:339889/91‑1 (MQ=255)

                                                      ttttCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAgtgt                                      <  2:1220951/91‑1 (MQ=255)

                                                         tCCGTTGTCTTATTTATCTTTTTTATAAAGAATAGTCATTACGTACATACTTCAACGCGTACGTAAAGTAATGTCTTATTTATAGTGTAat                                   <  2:1851520/91‑1 (MQ=255)

                                                         tCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAat                                   <  1:2888300/91‑1 (MQ=255)

                                                         tCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAat                                   >  2:2355991/1‑91 (MQ=255)

                                                          ccGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAata                                  <  2:207778/91‑1 (MQ=255)

                                                           cGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAatat                                 <  2:158147/91‑1 (MQ=255)

                                                           cGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAatat                                 >  2:3744579/1‑91 (MQ=255)

                                                            gTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATAtt                                <  2:1698840/91‑1 (MQ=255)

                                                                 tttatttaTCTTTTTTATTTATTTTTGTCATTACTTACATACATCAACGTGTACGTAAAGTTATGATTTATTTATTGTGTAATATTAAttt                           >  2:606575/1‑89 (MQ=255)

                                                                 tttatttaTCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtct                           <  2:3247646/91‑1 (MQ=255)

                                                                  ttatgtatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtctt                          <  2:802095/91‑1 (MQ=255)

                                                                     tttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttctt                       >  2:672243/1‑91 (MQ=255)

                                                                     tttatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttctt                       <  2:3945166/91‑1 (MQ=255)

                                                                       tatCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAAtcttcttct                     >  2:3766803/1‑91 (MQ=255)

                                                                        atCTTTTTTATAGAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTtctc                    <  2:3290028/91‑1 (MQ=255)

                                                                        atCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTtctc                    >  1:2229105/1‑91 (MQ=255)

                                                                         tCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTcc                   >  2:2813212/1‑91 (MQ=255)

                                                                         tCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTcc                   >  2:3445601/1‑91 (MQ=255)

                                                                         tCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTcc                   <  1:1771119/91‑1 (MQ=255)

                                                                          cTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCg                  <  1:1560826/91‑1 (MQ=255)

                                                                           ttttttATAAAAAATAGTCATTACTTACATACATCATCGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGt                 <  2:3567989/91‑1 (MQ=255)

                                                                             ttttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTaa               >  2:2700438/1‑91 (MQ=255)

                                                                              tttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt              <  2:1463685/91‑1 (MQ=255)

                                                                              tttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt              <  2:125674/91‑1 (MQ=255)

                                                                              tttATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAAt              >  2:3058830/1‑91 (MQ=255)

                                                                                 ataAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCg           <  2:1199177/91‑1 (MQ=255)

                                                                                    aaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCt        >  1:2844645/1‑91 (MQ=255)

                                                                                    aaaaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCt        >  1:1610700/1‑91 (MQ=255)

                                                                                      aaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCttt      <  2:819191/91‑1 (MQ=255)

                                                                                      aaaTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCttt      <  1:2753055/91‑1 (MQ=255)

                                                                                        aTAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTc    >  2:3538385/1‑91 (MQ=255)

TATGTGTTATACTTTATGGAATTAGTATAGCATATTATATGAAATTTGAAAGCGTTTTCCGTTGATTTATTTATCTTTTTTATAAAAAATAGTCATTACTTACATACATCAACGCGTACGTAAAGTAATGACTTATTTATAGTGTAATATTAATCTTCTTCTCCGTAATTCGGCTTTTCAA  >  USA300TCH1516_ALE/1789540‑1789720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.