| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1834059 = | 150 (0.740) | 17 (0.100) | 7/138 | NT | 11.6% | intergenic (+8/‑106) | osmC/USA300HOU_RS09140 | Peroxiredoxin OsmC/Soluble hydrogenase 42 kDa subunit |
| ? | USA300TCH1516_ALE | 1834098 = | 130 (0.740) | intergenic (+47/‑67) | osmC/USA300HOU_RS09140 | Peroxiredoxin OsmC/Soluble hydrogenase 42 kDa subunit | |||||
TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1834159‑1834059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT > USA300TCH1516_ALE/1834098‑1834187 TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGACCAAAC < 1:908954/91‑1TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAAC < 1:909849/91‑1TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAAC < 1:909148/91‑1 CCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGT < 1:1111961/91‑1 CCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGT > 2:3838321/1‑91 CCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGT > 2:3838145/1‑91 CCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGT > 2:2109243/1‑91 CCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGT > 1:2972725/1‑91 CTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTT < 1:1584772/91‑1 CTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTT < 1:820903/91‑1 CTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTT < 1:522099/91‑1 CTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTT < 1:3412625/91‑1 TCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTA > 2:3799793/1‑91 TCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTA > 2:3800564/1‑91 CTATAAATAAGATTTCACTATTTTAGCAACTTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATC < 1:2186382/91‑1 CTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAATTGATAACGCTATATTGTACAACAAACGTTATC > 1:1880833/1‑91 CTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGACCAAACGTTATC > 1:3587845/1‑91 CTATAAATAAGATTTCAATATTTTAGCAAATTTTCTGAAAATTTAAAAGAATAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATC < 2:554968/91‑1 CTATAAATAAGATTACACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATC < 2:2940796/91‑1 ATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAATCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCAC > 2:3596402/1‑91 ATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCAC < 1:1080604/91‑1 TAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACT > 2:274466/1‑91 AAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT < 2:834584/91‑1 AAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT > 2:2314721/1‑91 AAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT < 1:2877031/91‑1 AAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT < 1:2876914/91‑1 AAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTT > 1:3934847/1‑91 GTGATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTAT > 1:2172364/1‑91 TGATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATA > 2:1772070/1‑91 GATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAGATTTGCTAAAATAGTGAAATCTTATTTATAG > 1:3242416/1‑91 GATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAG > 1:3242798/1‑91 GATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAG > 1:3242389/1‑91 GATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAG > 2:2774536/1‑91 GATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAG > 2:2988595/1‑91 GATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAG > 1:844453/1‑91 GATAACGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAG > 1:844467/1‑91 GATAACGCTATATTGTCGAACAAACGTTAACACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGATAAAATAGTGAAATCTTATTTATAG > 2:1722502/1‑91 CGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGC > 1:3793412/1‑91 CGCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGC > 1:3793411/1‑91 GCTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCA > 1:1567574/1‑91 CTATATTGTCGGACAAACGTTCTCACTTTTTTAGGCCTTTAACTTTTCAGAAAATGTGCTAAAATAGTGAAATCTTATTTATAGGAGGCAT > 2:2070084/1‑91 CTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCAT > 2:430023/1‑91 CTATATTGTCGAACAAACGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAAATTGCTAAAATAGTGAAATCTTATTTATAGGAGGCAT > 2:3572304/1‑91 CGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATC < 2:3417989/91‑1 CGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATC < 1:3308738/91‑1 GTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCA > 1:1136769/1‑91 GTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCA < 1:964913/91‑1 GTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCA < 1:497787/91‑1 TTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAA < 1:1567132/91‑1 TTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGCCATATAAATGTATTATCATCAA > 2:3193008/1‑91 TATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAAC < 2:1189455/91‑1 TATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAAC < 2:2983915/91‑1 TATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAAC < 1:3255465/91‑1 ATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACC < 2:1205298/91‑1 ATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACC < 2:2409849/91‑1 ATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACC < 1:987349/91‑1 ATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACC > 2:1139664/1‑91 ATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATCATCATCAACa > 2:3838865/1‑90 TCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCG < 1:1489399/91‑1 TCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCG < 2:2467813/91‑1 TCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCG > 1:2922645/1‑91 CACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCCACCGT > 2:1221525/1‑91 CACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGT < 1:1858944/91‑1 CACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGT < 2:26073/91‑1 CACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGT < 1:1168896/91‑1 CACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGT < 2:1388371/91‑1 CACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGT < 1:1169188/91‑1 CACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGT > 1:747815/1‑91 CTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTG > 1:3732860/1‑91 TTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGT < 2:2833741/91‑1 TTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGT > 1:914418/1‑91 TTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGT < 2:990888/91‑1 TTTTTTAGGCTTTTAAATTTTCAGAAAATGTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGT < 2:995508/91‑1 TTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT < 1:3816288/91‑1 TGCCTCCTATAAATAAGATTTCACTATTTTAGCAAATTTTCTGAAAATTTAAAAGCCTAAAAAAGTGATAACGCTATATTGTCGAACAAACGTTATCACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1834159‑1834059‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttatcacttTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTT > USA300TCH1516_ALE/1834098‑1834187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |