| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1836934 = | 134 (0.660) | 22 (0.130) | 10/132 | NT | 16.5% | intergenic (+18/+132) | serA/gph_2 | D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase |
| ? | USA300TCH1516_ALE | 1836982 = | 112 (0.670) | intergenic (+66/+84) | serA/gph_2 | D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase | |||||
TAGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1837037‑1836934‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAA > USA300TCH1516_ALE/1836982‑1837071 TAGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTC > 1:374715/1‑91TAGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTC < 2:2763660/91‑1TAGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTC > 1:1784503/1‑91 AGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCT > 1:2964111/1‑91 GTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTT < 2:2969808/91‑1 TGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTC > 2:799247/1‑91 GAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCT > 1:229446/1‑91 ATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTCATAATGAAAAAATGCCACGAAGCAATGGAAGTAATCCAATGTCTTCTTG > 2:1267969/1‑91 ATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTG > 1:2866301/1‑91 ATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGCAACTAATCCCATTTCTTCTTG > 2:3752317/1‑91 TGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGG > 1:2607106/1‑91 GATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGC > 1:3393024/1‑91 GATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGC < 1:2647457/91‑1 ATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCA > 1:292771/1‑91 TTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCAT < 1:2416757/91‑1 TTGAACCAAAGGTTTCATATTGAGTCACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCAT < 1:3670004/91‑1 TGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTATTCCAATGTCTTCTTGGCATT < 1:1704995/91‑1 TGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATT < 2:1119283/91‑1 TGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATT < 2:702091/91‑1 TGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATT > 1:719236/1‑91 GAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATACTGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTT > 2:2208524/1‑91 GAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTT < 1:3802590/91‑1 GAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTT > 1:456554/1‑91 AACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTT < 2:2410035/91‑1 AACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTT < 2:2410079/91‑1 AACCAAAGGTATCATATTGAGGTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTT < 2:2409950/91‑1 ACCAAAGGTTTCATATTGAGTTACAATTAAATTAATAATGAAAAAATGCAAAGAAGAAATGGAAGTAATCCAATGTCTTCTTGGCAGTTTT > 2:3757052/1‑91 ACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTT > 1:2723528/1‑91 ACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTT > 1:2723588/1‑91 ATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAA > 1:1989487/1‑91 GCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATC > 2:376310/1‑91 GCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATC > 2:376380/1‑91 AAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATT > 1:2586254/1‑91 AAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTTTTTATTAATTTCATTGTAACTCAATATGAAACCTTTTTTTCAATCATTCAC > 2:2653617/1‑91 AAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCAC > 1:47708/1‑91 AGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACT > 1:1137130/1‑91 AGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACT > 1:423606/1‑91 GCAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTA > 2:2367058/1‑91 CAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTTTTTTTTTTTTTCATTGTAACTTAATATGAAACCTTTTGTTCTATCTTTCACTAC > 2:3312349/1‑91 CAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAC > 1:578374/1‑91 CAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAC > 1:1917830/1‑91 CAATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAC > 2:1158351/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACA > 1:2954263/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACA > 1:2956261/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACA > 1:2430367/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACA > 1:288947/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACA > 2:1864940/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACA > 2:3222846/1‑91 AATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCACTCACTACA > 1:2628752/1‑91 ATGGAAGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACca > 2:3083365/1‑89 AGTAATCCAATGTCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAT > 1:931636/1‑91 CTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCCTTCACTACAAGTTATGCTGTCAAACAAC > 2:2633441/1‑91 CTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAAC > 2:1070447/1‑91 CTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAAC < 1:1253947/91‑1 CTTCTTGGCATTTTATCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGTTTCAATCATTCTCTACAATTTTTACTGTCCAACAgc > 2:2633752/1‑89 TCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAA < 2:1653474/91‑1 TCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAA > 2:3692918/1‑91 TCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAA < 2:396502/91‑1 CTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAAT > 1:1427818/1‑91 CTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAAT > 1:2601840/1‑91 CTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAAT > 1:27809/1‑91 CTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAAT > 1:2601797/1‑91 CTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAAT < 2:200473/91‑1 TGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCA < 1:3923207/91‑1 TGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCA > 2:2967035/1‑91 TGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCA > 2:1719675/1‑91 TGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCA > 2:1718930/1‑91 GCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAA < 2:795119/91‑1 GCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAA < 1:1865738/91‑1 CATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAAT > 1:3532023/1‑91 CATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAAT > 1:1103271/1‑91 CATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAAT > 1:872760/1‑91 ATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATT > 2:34053/1‑91 ATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATT > 2:34179/1‑91 TTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTA < 1:1919009/91‑1 TTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTA < 2:499912/91‑1 TTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTA < 1:91513/91‑1 TTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTA < 1:91566/91‑1 TTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTAC > 1:1605393/1‑91 TTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACTAGTTATGCTGTTAAACAACAATCAATTTACAA > 2:3805315/1‑91 TTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAA > 1:2763225/1‑91 TTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAA < 1:1790269/91‑1 TTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAA < 2:2050837/91‑1 TAGTGAATGATTGAACCAAAGGTTTCATATTGAGTTACAATGAAATTAATAATGAAAAAATGCCAAGAAGCAATGGAAGTAATCCAATGTCTTCTTGGCATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1837037‑1836934‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAA > USA300TCH1516_ALE/1836982‑1837071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |