BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1836934 =	134 (0.660)	22 (0.130)	10/132	NT	16.5%	intergenic (+18/+132)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
*	?	USA300TCH1516_ALE	1836982 =	112 (0.670)	22 (0.130)	10/132	NT	16.5%	intergenic (+66/+84)	serA/gph_2	D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 218 total aligned reads displayed.

AACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAAA  >  USA300TCH1516_ALE/1836892‑1837072

accaaaggtttcatattgagttacaattaaattaataatgaaaaaatgcaaagaagaaatggaagtaatccaatgtcttcttggcagtttt                                                                                            >  2:3757052‑M2/91‑91 (MQ=255)

accaaaggtttcatattgagttacaatgaaattaataatgaaaaaatgccaagaagcaatggaagtaatccaatgtcttcttggcattttt                                                                                            >  1:2723588‑M2/91‑91 (MQ=255)

aaCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAttttt                                                                                            >  1:3861893/1‑91 (MQ=255)

 aCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCAtttttt                                                                                           <  2:1152326/91‑1 (MQ=255)

 aCTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTACTTGGCAtttttt                                                                                           >  1:1811358/1‑91 (MQ=255)

  cTGAATTGACGGTACAGTCATAAACACTTTATGGAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTc                                                                                          <  1:1468284/91‑1 (MQ=255)

  cTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTc                                                                                          <  2:3743524/91‑1 (MQ=255)

   tGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCa                                                                                         >  2:2068063/1‑91 (MQ=255)

   tGAATTGACGGTACAGGCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCa                                                                                         <  2:3587375/91‑1 (MQ=255)

      aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                                                                      <  1:349994/91‑1 (MQ=255)

       ttGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattat                                                                                     <  1:815985/91‑1 (MQ=255)

        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCATGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                                    <  2:767686/91‑1 (MQ=255)

        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                                                                    <  1:2654253/91‑1 (MQ=255)

         gACGGTACAGTCATAAACACTTTATGTAAATTCACAATGCCAAGAAGACATTGGCTTACTTCCATCGCTTCTTGGCATTTTTTCAttatta                                                                                   >  2:1901597/1‑91 (MQ=255)

         gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTCCTTCCATTGCTTCTTGGCATTCTTTCAttatta                                                                                   >  2:93076/1‑91 (MQ=255)

         gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                                   >  2:3092076/1‑91 (MQ=255)

         gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                                                                   >  1:1274001/1‑91 (MQ=255)

         gACGGTACAGTCATAAACAATTTATGTAAATTAAACATGCGAAGAAGACATTGGATTGATTCTATGGCTTCTTGGCATATTTTCAgtatta                                                                                   >  2:2212835/1‑91 (MQ=255)

          aCGTTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTATTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                                  <  2:1737497/91‑1 (MQ=255)

          aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                                  <  2:168412/91‑1 (MQ=255)

          aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                                                                  <  2:897123/91‑1 (MQ=255)

           cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                                                                 >  2:2884791/1‑91 (MQ=255)

            ggTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAtt                                                                                >  1:3630957/1‑91 (MQ=255)

              tACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTc                                                                              >  2:1385685/1‑91 (MQ=255)

                 aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                                                                           >  1:2318277/1‑91 (MQ=255)

                 aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                                                                           >  1:2219268/1‑91 (MQ=255)

                  gacATAAACAATGTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTAGCATTTTTTCATTATTAATTTCATTg                                                                          <  2:1252963/89‑1 (MQ=255)

                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCTTTATTTATTTCAttt                                                                          >  2:501244/1‑90 (MQ=255)

                  gTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTg                                                                          >  2:2512170/1‑91 (MQ=255)

                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                                         >  1:110486/1‑91 (MQ=255)

                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                                                                         <  2:3415952/91‑1 (MQ=255)

                        aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                                    >  1:3566183/1‑91 (MQ=255)

                        aaCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTc                                                                    <  1:1399366/91‑1 (MQ=255)

                          cAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCaa                                                                  >  1:470471/1‑91 (MQ=255)

                           aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat                                                                 >  1:3607762/1‑91 (MQ=255)

                           aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat                                                                 >  1:826707/1‑91 (MQ=255)

                            aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                                                                <  1:619855/91‑1 (MQ=255)

                             tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCCTTATTAATTTCATTGTAACTCCatat                                                               >  1:3428699/1‑91 (MQ=255)

                              ttATGTAAATTGAAAATGCCAAGAAGACATTGGATTACTTCCCTTGCTTCTTGGCATGATTTCATTATTAATTCCATTGTAACTCAATATg                                                              >  2:2715029/1‑91 (MQ=255)

                              ttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                                                              >  2:1968455/1‑91 (MQ=255)

                              ttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg                                                              <  1:3868708/91‑1 (MQ=255)

                                  gtgaaTTCAGAATGCCAAGAAGACATTGGATTACTTCCAGTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc                                                          <  2:3247969/88‑1 (MQ=255)

                                    aaaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCt                                                        >  1:23403/1‑91 (MQ=255)

                                     aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                                       >  1:526428/1‑91 (MQ=255)

                                     aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                                       <  2:2789624/91‑1 (MQ=255)

                                     aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt                                                       <  2:3220684/91‑1 (MQ=255)

                                      aTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCttt                                                      <  2:150242/91‑1 (MQ=255)

                                       ttCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTg                                                     <  2:1520428/91‑1 (MQ=255)

                                        tCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTgg                                                    <  2:1457734/91‑1 (MQ=255)

                                         cAAAATGCCAAGAAGACATTGGGTTACTTCCATTGCTTCTTAGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                   <  2:3470682/91‑1 (MQ=255)

                                         cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                   <  2:1808210/91‑1 (MQ=255)

                                         cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                   <  2:189350/91‑1 (MQ=255)

                                         aAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt                                                   >  1:2723528‑M1/2‑91 (MQ=255)

                                          AAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTACCTCAATATGATACCTTTGGtt                                                  <  2:2409950‑M1/91‑1 (MQ=255)

                                          AAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGtt                                                  <  2:2410079‑M1/91‑1 (MQ=255)

                                            AATGCCAAGAAGACATTGGAATACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCa                                                <  1:1704995‑M1/91‑1 (MQ=255)

                                             ATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCaa                                               <  1:2416757‑M1/91‑1 (MQ=255)

                                              TGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAAt                                              >  1:292771‑M1/1‑91 (MQ=255)

                                               gccaagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                             >  2:376380‑M2/44‑91 (MQ=255)

                                               GCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATc                                             >  1:3393024‑M1/1‑91 (MQ=255)

                                                 CAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAt                                           >  1:2866301‑M1/1‑91 (MQ=255)

                                                  aagaagcaatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCAtt                                          >  1:2586254‑M2/41‑91 (MQ=255)

                                                    GAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCa                                        >  2:799247‑M1/1‑91 (MQ=255)

                                                     AAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCAc                                       <  2:2969808‑M1/91‑1 (MQ=255)

                                                      AGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACt                                      >  1:2964111‑M1/1‑91 (MQ=255)

                                                       GACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa                                     >  1:374715‑M1/1‑91 (MQ=255)

                                                       GACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTa                                     >  1:1784503‑M1/1‑91 (MQ=255)

                                                        caatggaagtaatccaatgtcttcttggcattttTTTTTTTTTTTTTTCATTGTAACTTAATATGAAACCTTTTGTTCTATCTTTCACTAc                                    >  2:3312349‑M2/35‑91 (MQ=255)

                                                        caatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTAc                                    >  1:1917830‑M2/35‑91 (MQ=255)

                                                         aatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACa                                   >  1:288947‑M2/34‑91 (MQ=255)

                                                         aatggaagtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCACTCACTACa                                   >  1:2628752‑M2/34‑91 (MQ=255)

                                                           ttGGATTACTTCCATTGCTTCTTGGCATTTTTTCATAATTAATTTGATTGTAACCCAATATGAAACCTTTGGTTCAATCATTCACTAccac                                 >  2:145693/1‑88 (MQ=255)

                                                             ggATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAATTCATTCTAACTCAATATGAAACCTCGGGTTCAATCATTCACTACAAGtt                               >  2:3673383/1‑91 (MQ=255)

                                                               agtaatccaatgtcttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt                             >  1:931636‑M2/28‑91 (MQ=255)

                                                               aTTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTAt                             <  1:2031876/91‑1 (MQ=255)

                                                                  aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt                          >  2:229372/1‑91 (MQ=255)

                                                                  aCTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCt                          <  2:444872/91‑1 (MQ=255)

                                                                   cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                         >  2:3028499/1‑91 (MQ=255)

                                                                   cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                         >  1:1152620/1‑91 (MQ=255)

                                                                   cTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTg                         >  2:1166768/1‑91 (MQ=255)

                                                                    ttCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGt                        <  2:3730632/91‑1 (MQ=255)

                                                                    ttCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGt                        <  2:2202512/91‑1 (MQ=255)

                                                                     tCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTc                       <  2:3401424/91‑1 (MQ=255)

                                                                     tCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTc                       >  2:2025416/1‑91 (MQ=255)

                                                                          tGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaaca                  <  1:1062204/91‑1 (MQ=255)

                                                                          tGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaaca                  <  2:3923800/91‑1 (MQ=255)

                                                                          tGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaaca                  >  1:166844/1‑91 (MQ=255)

                                                                           gCTTCTTGGCATTTTTTCATTATTATTTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaa                 >  2:2322381/1‑91 (MQ=255)

                                                                           gCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaa                 >  1:892080/1‑91 (MQ=255)

                                                                            cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCCTTCACTACAAGTTATGCTGTCAaacaac                >  2:2633441‑M2/15‑91 (MQ=255)

                                                                            cttcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAaacaac                >  2:1070447‑M2/15‑91 (MQ=255)

                                                                              tcttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAAcaacaa              <  2:396502‑M2/79‑1 (MQ=255)

                                                                               cttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAAt             >  1:2601840‑M2/12‑91 (MQ=255)

                                                                               cttggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAAt             >  1:27809‑M2/12‑91 (MQ=255)

                                                                                 tggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCa           <  1:3923207‑M2/82‑1 (MQ=255)

                                                                                 tggcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCa           >  2:1718930‑M2/10‑91 (MQ=255)

                                                                                   gcattttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCaaa         <  1:1865738‑M2/84‑1 (MQ=255)

                                                                                      ttttTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTa      <  1:91566‑M2/87‑1 (MQ=255)

                                                                                         tTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACTAGTTATGCTGTTAAACAACAATCAATTTACaa   >  2:3805315‑M2/2‑91 (MQ=255)

                                                                                          ttCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATcaaattacaaa  <  1:2692706/91‑1 (MQ=255)

AACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTTCAATCATTCACTACAAGTTATGCTGTCAAACAACAATCAAATTACAAA  >  USA300TCH1516_ALE/1836892‑1837072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.