New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1836934 =134 (0.660)22 (0.130) 10/132 NT 16.5% intergenic (+18/+132) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase
?USA300TCH1516_ALE 1836982 = 112 (0.670)intergenic (+66/+84) serA/gph_2 D‑3‑phosphoglycerate dehydrogenase/Phosphoglycolate phosphatase

Only 100 of 300 total aligned reads displayed.

TATAATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTT  >  USA300TCH1516_ALE/1836844‑1837024
                                                                                          |                                                                                          
ttgtaatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaa                                                                                            >  1:2763225‑M1/91‑91 (MQ=255)
ttgtaatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaa                                                                                            <  1:1790269‑M1/1‑1 (MQ=255)
 ataATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAA                                                                                           >  2:352577‑M1/1‑91 (MQ=255)
  taATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAA                                                                                          <  2:2066141‑M1/91‑1 (MQ=255)
  gtaatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaaaa                                                                                          >  1:1605393‑M1/89‑91 (MQ=255)
   taatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaaaaa                                                                                         <  1:1919009‑M1/4‑1 (MQ=255)
   aaTTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAA                                                                                         >  1:2622735‑M1/1‑91 (MQ=255)
    aatttgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAAt                                                                                        >  2:34053‑M1/87‑91 (MQ=255)
        tgattgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCa                                                                                    >  2:1718930‑M1/83‑91 (MQ=255)
        atgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCA                                                                                    <  1:1723623‑M1/91‑1 (MQ=255)
         tgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGCATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAA                                                                                   >  2:86498‑M1/1‑91 (MQ=255)
         tgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAA                                                                                   >  1:3313481‑M1/1‑91 (MQ=255)
         tgaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAA                                                                                   <  1:3808903‑M1/91‑1 (MQ=255)
          gaACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAG                                                                                  <  2:108279‑M1/91‑1 (MQ=255)
          attgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaag                                                                                  >  1:2601840‑M1/81‑91 (MQ=255)
          attgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaag                                                                                  >  1:1427818‑M1/81‑91 (MQ=255)
           ttgttgtttgacagcataacttgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaaga                                                                                 >  2:3692918‑M1/80‑91 (MQ=255)
            aCTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAA                                                                                >  2:2031876‑M1/1‑91 (MQ=255)
            aCTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAA                                                                                >  1:2160260‑M1/1‑91 (MQ=255)
             gttgtttgacagcataacttgtagtgaaggattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCaagaag                                                                               >  2:2633441‑M1/78‑91 (MQ=255)
             cTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAG                                                                               <  1:1259132‑M1/91‑1 (MQ=255)
               tAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGAc                                                                             <  1:3860997/91‑1 (MQ=255)
                aaaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACa                                                                            <  1:2342600/91‑1 (MQ=255)
                aaaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAAGTCAAAATGCCAAGAAGACa                                                                            <  2:251371/91‑1 (MQ=255)
                 aaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAt                                                                           <  1:1976041/91‑1 (MQ=255)
                 aaCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAt                                                                           >  2:3296118/1‑91 (MQ=255)
                  acacGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACact                                                                          >  1:1813340/1‑89 (MQ=255)
                  aCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAtt                                                                          <  2:1457037/91‑1 (MQ=255)
                  aCAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACAtt                                                                          >  1:686476/1‑91 (MQ=255)
                      gTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAt                                                                      <  1:1842133/91‑1 (MQ=255)
                       ttGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGAtt                                                                     >  2:1524694/1‑91 (MQ=255)
                         ggTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTAc                                                                   >  1:1363010/1‑91 (MQ=255)
                         ggTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTAc                                                                   <  2:1914601/91‑1 (MQ=255)
                              aTACAATCAAATTTTCTCAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCa                                                              <  2:3034817/91‑1 (MQ=255)
                               tACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAt                                                             <  2:1810341/91‑1 (MQ=255)
                               tACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAt                                                             >  1:3900007/1‑91 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            >  2:3222846‑M1/59‑91 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            >  1:2956261‑M1/59‑91 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            >  1:288947‑M1/59‑91 (MQ=255)
                                tgtagtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            >  1:2430367‑M1/59‑91 (MQ=255)
                                gcaATCAAAGTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCGAGGAGcaatggaagtaatccaatg                                                            <  2:1750617‑M1/90‑20 (MQ=255)
                                aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatg                                                            <  1:2105212‑M1/91‑20 (MQ=255)
                                aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            <  2:228366/91‑1 (MQ=255)
                                aCAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCAtt                                                            <  2:1364325/91‑1 (MQ=255)
                                 cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgt                                                           <  2:530099‑M1/91‑21 (MQ=255)
                                 cAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTg                                                           <  1:2997315/91‑1 (MQ=255)
                                  aaTCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtc                                                          <  1:1147097‑M1/91‑22 (MQ=255)
                                   agtgaatgattgaaccaaaggtttcatattgagttacaatgaaattaataatgaaAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                         >  1:423606‑M1/56‑91 (MQ=255)
                                   aTCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGct                                                         <  1:1058979‑M2/91‑3 (MQ=255)
                                     cAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttc                                                       <  1:794089‑M1/91‑25 (MQ=255)
                                     cAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttc                                                       <  2:326769‑M2/91‑5 (MQ=255)
                                      aaaTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttct                                                      <  1:475726‑M1/91‑26 (MQ=255)
                                       aaTTTTCACGACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttctt                                                     >  2:1183048‑M2/1‑85 (MQ=255)
                                        aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                    >  1:3250224‑M2/1‑84 (MQ=255)
                                        aTTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttg                                                    >  1:3743010‑M2/1‑84 (MQ=255)
                                         ttttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttcttgg                                                   <  2:2937293‑M1/91‑29 (MQ=255)
                                          tttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttcttggc                                                  <  2:2114729‑M1/91‑30 (MQ=255)
                                           ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                 >  1:2799036‑M2/1‑81 (MQ=255)
                                           ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                 >  2:3941815‑M2/1‑81 (MQ=255)
                                           ttCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggca                                                 >  2:194319‑M2/1‑81 (MQ=255)
                                            tCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcat                                                <  2:1657115‑M2/91‑12 (MQ=255)
                                             cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                               <  2:2107166‑M2/91‑13 (MQ=255)
                                             cacaACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatt                                               <  2:1571901‑M2/91‑13 (MQ=255)
                                              acaACTGAATTGACCGTACAGTCATAATCAATGTATATAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattt                                              >  2:2401509‑M2/1‑78 (MQ=255)
                                               caACTGAATTGACGGTACAGTCATAACCAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                             >  2:334888‑M2/1‑77 (MQ=255)
                                               caACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcatttt                                             >  1:1991085‑M2/1‑77 (MQ=255)
                                                      aTTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCatta                                      <  1:349994/91‑1 (MQ=255)
                                                        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCATGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                    <  2:767686/91‑1 (MQ=255)
                                                        tGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCattatt                                    <  1:2654253/91‑1 (MQ=255)
                                                         gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTCCTTCCATTGCTTCTTGGCATTCTTTCAttatta                                   >  2:93076/1‑91 (MQ=255)
                                                         gACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCAttatta                                   >  2:3092076/1‑91 (MQ=255)
                                                         gACGGTACAGTCATAAACAATTTATGTAAATTAAACATGCGAAGAAGACATTGGATTGATTCTATGGCTTCTTGGCATATTTTCAgtatta                                   >  2:2212835/1‑91 (MQ=255)
                                                          aCGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTaa                                  <  2:464861/91‑1 (MQ=255)
                                                           cGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAAt                                 >  1:1867328/1‑91 (MQ=255)
                                                                 aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                           >  1:2318277/1‑91 (MQ=255)
                                                                 aGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCAtt                           >  1:2219268/1‑91 (MQ=255)
                                                                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                         >  1:110486/1‑91 (MQ=255)
                                                                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                         <  1:3611538/91‑1 (MQ=255)
                                                                   tCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGt                         <  2:1210960/91‑1 (MQ=255)
                                                                    cATAAACAATTTATGTAAATTCAAAATGCCAAGAAGcaatggaagtaatccaatgtcttcttggcattttgaatttacataaattgtttat                        <  1:1991530‑M1/91‑56 (MQ=255)
                                                                     aTAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGcttcttggcattttgaatttacataaattgtttatg                       <  1:1991904‑M2/91‑37 (MQ=255)
                                                                          cAATTTATGTAAATTCAAAATGCTAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTATAACTCaa                  >  2:3426325/1‑91 (MQ=255)
                                                                           aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat                 <  2:1019135/91‑1 (MQ=255)
                                                                           aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat                 >  1:918865/1‑91 (MQ=255)
                                                                           aaTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAat                 >  1:826707/1‑91 (MQ=255)
                                                                            aTTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAata                >  1:912435/1‑91 (MQ=255)
                                                                             tttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCCTTATTAATTTCATTGTAACTCCatat               >  1:3428699/1‑91 (MQ=255)
                                                                              ttATGTAAATTGAAAATGCCAAGAAGACATTGGATTACTTCCCTTGCTTCTTGGCATGATTTCATTATTAATTCCATTGTAACTCAATATg              >  2:2715029/1‑91 (MQ=255)
                                                                              ttATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATg              <  1:147487/91‑1 (MQ=255)
                                                                               tATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGa             <  2:3794504/91‑1 (MQ=255)
                                                                                  gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc          >  1:3573557/1‑91 (MQ=255)
                                                                                  gTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAAc          >  2:2838415/1‑91 (MQ=255)
                                                                                     aaTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCtt       >  1:526428/1‑91 (MQ=255)
                                                                                      aTTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCttt      <  2:150242/91‑1 (MQ=255)
                                                                                        tCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTgg    <  2:1457734/91‑1 (MQ=255)
                                                                                         cAAAATGCCAAGAAGACATTGGGTTACTTCCATTGCTTCTTAGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt   <  2:3470682/91‑1 (MQ=255)
                                                                                         cAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt   <  2:189360/91‑1 (MQ=255)
                                                                                         aAAACTGCCAAGAAGACATTGGATTACTTCCATTTCTTCTTTGCATTTTTTCATTATTAATTTAATTGTAACTCAATATGAAACCTTTGGt   >  2:3757052‑M1/2‑91 (MQ=255)
                                                                                         aAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGt   >  1:2723528‑M1/2‑91 (MQ=255)
                                                                                          AAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGtt  <  2:2410079‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
TATAATTGATGAACTTAAACAAGTTGGTGAATACAATCAAATTTTCACAACTGAATTGACGGTACAGTCATAAACAATTTATGTAAATTCAAAATGCCAAGAAGACATTGGATTACTTCCATTGCTTCTTGGCATTTTTTCATTATTAATTTCATTGTAACTCAATATGAAACCTTTGGTT  >  USA300TCH1516_ALE/1836844‑1837024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.