| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1838263 | 164 (0.810) | 26 (0.150) | 10/140 | NT | 15.2% | intergenic (‑67/+40) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component |
| ? | USA300TCH1516_ALE | = 1838279 | 147 (0.830) | intergenic (‑83/+24) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component | |||||
AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1838164‑1838263‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcaaaTCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA < USA300TCH1516_ALE/1838279‑1838190 AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA < 1:3795274/91‑1AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA > 1:1576/1‑91AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACCCCACTTCTGAAAATTCAGCTATAAATCATTCTACTATTTGACTAAAAA > 2:105799/1‑91 CGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAA > 2:1428729/1‑91 CGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAA > 2:1574148/1‑91 CGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAA > 2:1800327/1‑91 CGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAA > 2:298234/1‑91 GCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTCAAAAAAG > 2:3512818/1‑91 GCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAG < 1:2905755/91‑1 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 1:3498603/1‑91 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 1:3427998/1‑91 CATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG > 1:2382237/1‑91 CATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG > 1:2139596/1‑91 CATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG > 1:1127592/1‑91 CATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG > 2:80941/1‑91 ATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGC > 2:2995934/1‑91 ATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGC < 1:1274261/91‑1 ATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGC > 1:2651687/1‑91 TCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCA > 1:914160/1‑91 TCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCA > 1:914252/1‑91 TCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCA > 1:914023/1‑91 TCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCA > 1:3615494/1‑91 CAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAA < 1:2372363/91‑1 CAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAA < 1:2372377/91‑1 CAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAA > 2:1900140/1‑91 AACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA > 1:864885/1‑91 TTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAG < 1:2577152/91‑1 TTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGG < 2:551998/91‑1 TTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGG < 1:1503046/91‑1 TTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGG < 1:791529/91‑1 TTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGG < 1:3530821/91‑1 TTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGG < 1:1952902/91‑1 TCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGT < 2:2663242/91‑1 TCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGT < 1:1301937/91‑1 TCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGT < 2:2662763/91‑1 TCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGT < 2:3873875/91‑1 TCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGT < 1:599624/91‑1 TCTTCACAAGCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGT < 1:3790459/91‑1 TCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTG < 1:804095/91‑1 TCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTG < 1:111260/91‑1 TCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTG < 1:2934831/91‑1 CACAGTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 2:120550/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 1:3920496/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 1:2305423/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 1:3894665/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 2:679840/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 2:2719861/91‑1 ACAATCCCTACTCCATTTCTGAAAATGCAGATATAAATCATTCTACTATTTGACTAAGAAATGCGCAAATCTAACTTCAATAGGGTTTGCG < 2:3441522/91‑1 AATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGCT < 2:3943822/91‑1 ATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTT < 2:2210285/91‑1 ATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTT < 2:1079315/91‑1 TCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTT < 1:1110703/91‑1 AAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGA > 1:586245/1‑91 AAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT < 1:2608318/91‑1 AAGCGCAAATCTAACTTCAATAGGGTATGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT > 2:2237669/1‑91 AGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATT > 2:3241241/1‑91 AGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATT > 2:2206773/1‑91 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG > 1:3080043/1‑91 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG < 2:548243/91‑1 CGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGT > 2:2145889/1‑91 GCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTG > 1:469298/1‑91 GCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTG < 1:174509/91‑1 GCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAGTGTG > 1:3296818/1‑91 CAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGA < 2:681519/91‑1 CAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGA < 2:3898639/91‑1 CAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGA > 1:1233837/1‑91 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA > 2:1678922/1‑91 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA > 2:13347/1‑91 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA < 2:1141796/91‑1 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA > 1:111951/1‑91 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA < 2:548044/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 1:1845358/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 1:3713592/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 1:3428811/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 2:3949077/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 1:1610172/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 1:1610709/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 2:101941/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 2:2681335/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 1:1611554/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGGGGGGATTGTGAAG > 1:2186032/1‑91 ATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA < 1:1368152/91‑1 ATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA > 1:3094099/1‑91 ATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA > 1:921838/1‑91 ATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA > 1:2273561/1‑91 AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1838164‑1838263‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcaaaTCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA < USA300TCH1516_ALE/1838279‑1838190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |