| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1838263 | 164 (0.810) | 26 (0.150) | 10/140 | NT | 15.2% | intergenic (‑67/+40) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component |
| ? | USA300TCH1516_ALE | = 1838279 | 147 (0.830) | intergenic (‑83/+24) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component | |||||
Only 100 of 354 total aligned reads displayed.
AACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAC > USA300TCH1516_ALE/1838173‑1838353 | attcaactcaagttattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCaaa > 1:3899809‑M1/82‑91 (MQ=255) acatcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAc < 1:992648/91‑1 (MQ=255) catcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAcc > 2:2904903/1‑91 (MQ=255) atcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAccc < 1:729260/91‑1 (MQ=255) tcaaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCt > 1:3824927/1‑91 (MQ=255) caaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTa < 2:1019470/91‑1 (MQ=255) caaATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTa > 2:366305/1‑91 (MQ=255) aaTAAAATTTTCTTCACAACCCCCCCTCCATTTCTGCAAATTCAGATATAAATCCTTCAACTATCTGACTAAATAAAGCGCAAACTGTAtt > 2:2900970/1‑91 (MQ=255) aTAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTg > 2:1907893/1‑91 (MQ=255) aTAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTg < 1:1437208/91‑1 (MQ=255) aaaaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGaa < 2:2602426/91‑1 (MQ=255) aaaaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGaa > 2:2162629/1‑91 (MQ=255) aaaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAg < 2:1369274/91‑1 (MQ=255) aaTTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGt < 1:2693970/91‑1 (MQ=255) tattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGtt > 2:236485‑M1/69‑91 (MQ=255) tattgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGtt > 1:3720322‑M1/69‑91 (MQ=255) tattggcggaacacacgtacagcaggttgctgatgaaattgaaaaacatttatgaaatttaaacagctAAAGCGCAAACCCTATTGAAGtt > 1:3344424‑M1/69‑91 (MQ=255) tttCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagg < 2:551998‑M1/91‑16 (MQ=255) ttgtcggtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAg > 1:1920839‑M1/67‑91 (MQ=255) ttcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaataggg < 1:1503046‑M1/91‑17 (MQ=255) ttcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGa < 2:3734891/91‑1 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggt < 1:1301937‑M1/91‑18 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAt > 1:2273561‑M2/1‑90 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAt > 1:3094099‑M2/1‑90 (MQ=255) tcttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAt > 1:921838‑M2/1‑90 (MQ=255) cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt > 1:1610172‑M2/1‑89 (MQ=255) cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt > 1:1611554‑M2/1‑89 (MQ=255) cttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtt > 1:3428811‑M2/1‑89 (MQ=255) ctgcacgATCCCCACTCCATTTCTGAAAATTCAGAGATAAATCATTCTACTATTTGACTAAAAAAAGCGCATACCCGATTGAAGTTAGAtt < 2:3243289/88‑1 (MQ=255) ttcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAttt < 2:548044‑M2/91‑4 (MQ=255) tcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttg < 1:2934831‑M1/91‑21 (MQ=255) tcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttg < 1:111260‑M1/91‑21 (MQ=255) tcACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttg < 2:3898639‑M2/91‑5 (MQ=255) gtacacacgtacagcaggttgctgatgaaattgaaaaacatttataaaatttaaacagctAAAGCGCAAACCCTATTGAAGTTAGATTTgc > 2:620331‑M1/61‑91 (MQ=255) cacaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgc < 1:3894665‑M1/91‑22 (MQ=255) cacaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgc < 2:2719861‑M1/91‑22 (MQ=255) cacaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgc < 1:174509‑M2/91‑6 (MQ=255) acaATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcg > 2:2145889‑M2/1‑85 (MQ=255) aaTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgct > 2:2206773‑M2/1‑83 (MQ=255) aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAAtctaacttcaatagggtttgcgctt < 2:1079315‑M1/91‑26 (MQ=255) aTCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGAtttgcgctt < 1:2608318‑M2/91‑10 (MQ=255) cccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAg > 2:3871701/1‑91 (MQ=255) ccACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGc > 2:3138975/1‑91 (MQ=255) cACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGGTTTAGCt > 1:1958004/1‑91 (MQ=255) cTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGt < 2:1976714/91‑1 (MQ=255) ccATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGttt < 2:3380429/91‑1 (MQ=255) tttCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTaaa > 2:3957117/1‑91 (MQ=255) ttCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAt > 1:521310/1‑91 (MQ=255) cTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAAttt > 2:3180298/1‑91 (MQ=255) gAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta < 1:847221/91‑1 (MQ=255) gAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta > 2:2284090/1‑91 (MQ=255) gAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTta > 1:29948/1‑91 (MQ=255) aaaTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTtata < 2:2433530/91‑1 (MQ=255) aTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaaa < 1:3534353/91‑1 (MQ=255) aTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATaaa < 1:2553178/91‑1 (MQ=255) tCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATg > 1:3937042/1‑91 (MQ=255) cAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGt > 1:199808/1‑91 (MQ=255) cAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGt > 2:738175/1‑91 (MQ=255) gATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt > 1:3578695/1‑91 (MQ=255) gATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttt < 2:1690953/91‑1 (MQ=255) atatAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGtttt < 2:950306/91‑1 (MQ=255) tataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt < 1:2494396/91‑1 (MQ=255) tataAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGttttt > 2:1445257/1‑91 (MQ=255) ataAATCATTCTACTAATAAAAAAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTc < 2:2620455/91‑1 (MQ=255) taAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTCAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCa > 1:1080195/1‑91 (MQ=255) aaTCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAAt < 1:456339/91‑1 (MQ=255) cATTCTACTATTTGACTAAAAAAAGTGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 1:3677435/91‑1 (MQ=255) cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 2:839892/91‑1 (MQ=255) cATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtc < 2:1159995/91‑1 (MQ=255) aTTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtca > 1:107248/1‑91 (MQ=255) aTTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtca > 1:2215541/1‑91 (MQ=255) aTTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtca > 1:66548/1‑91 (MQ=255) tCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTtcatc < 1:3359254/91‑1 (MQ=255) ctaTTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCa > 2:3240939/1‑91 (MQ=255) ttGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACct > 1:2038174/1‑91 (MQ=255) gACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACctgc > 1:3615784/1‑91 (MQ=255) aaaaaaaGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTa > 2:12703/1‑91 (MQ=255) aaGCGCAAAtctaacttcaatagggtatgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggat > 2:2237669‑M1/1‑9 (MQ=255) AAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtgt < 1:2798667‑M1/91‑1 (MQ=255) aGCGCAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggatt < 2:3943822‑M2/91‑68 (MQ=255) AGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACgtgtg < 1:1191121‑M1/91‑1 (MQ=255) gcgcAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattg > 1:3080043‑M1/1‑7 (MQ=255) CGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTa < 2:1594562‑M1/91‑1 (MQ=255) gcAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggagtgtg > 1:3296818‑M1/1‑5 (MQ=255) gcAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggactgtg < 2:120550‑M2/91‑71 (MQ=255) GCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAc < 1:56963‑M1/91‑1 (MQ=255) cAAAtctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtga < 2:681519‑M1/91‑88 (MQ=255) cAAACCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtga < 1:804095‑M2/91‑72 (MQ=255) CAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc > 1:246685‑M1/1‑91 (MQ=255) CAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc < 2:3960461‑M1/91‑1 (MQ=255) CAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc < 2:2211379‑M1/91‑1 (MQ=255) CAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTAcc > 2:3534039‑M1/1‑91 (MQ=255) aaatctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaa > 1:111951‑M1/1‑3 (MQ=255) aatctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaag < 1:1845358‑M1/91‑90 (MQ=255) aatctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggaggggggattgtgaag > 1:2186032‑M1/1‑2 (MQ=255) AACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGa < 1:598820‑M1/91‑1 (MQ=255) AACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGa > 2:2678131‑M1/1‑91 (MQ=255) atctaacttcaatagggtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaaga < 1:1368152‑M1/91‑91 (MQ=255) aCCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggcttgtgaaga < 1:3790459‑M2/91‑75 (MQ=255) aCCCTATTGAAGTTAGAtttgcgctttttttagtcaaatagtagaatgatttatatctgaattttcagaaatggagtggggattgtgaaga < 2:2662763‑M2/91‑75 (MQ=255) | AACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAACCCTATTGAAGTTAGATTTGCGCTTTAGCTGTTTAAATTTTATAAATGTTTTTCAATTTCATCAGCAACCTGCTGTACGTGTGTACCGAC > USA300TCH1516_ALE/1838173‑1838353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |