| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1841996 | 129 (0.630) | 23 (0.140) | 7/134 | NT | 18.5% | intergenic (+36/+58) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | = 1842015 | 95 (0.560) | intergenic (+55/+39) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase | |||||
ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1841894‑1841996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcctactcatATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < USA300TCH1516_ALE/1842015‑1841926 ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA > 1:322721/1‑91ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA > 2:3229785/1‑91ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAA > 2:1258563/1‑91 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG > 1:85237/1‑91 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG < 1:2407603/91‑1 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG < 2:167515/91‑1 CCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAG < 2:18818/91‑1 CAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGA > 1:3760693/1‑91 CAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGA < 2:340664/91‑1 CAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGA < 2:340764/91‑1 AAAACGTCAAAGCCGATCAGAACGTCAATGACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG < 1:3178399/91‑1 AAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG > 1:2116512/1‑91 AAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG > 1:2150186/1‑91 AAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAG < 1:1109382/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC > 2:750138/1‑91 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC < 2:2600913/91‑1 AAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGC < 2:2600979/91‑1 ACGTCAAAGCCTATCAGAACGTCAATCACCTGGCCAAGACTATAGAGATTTCTTTAGATAATTTACAGACAGTAAAGTACATTAAGAGCCT < 2:880676/91‑1 ACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCT < 1:686659/91‑1 ACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCT < 1:2169113/91‑1 CGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGTCAGAAAAGTACATTAAGAGCCTA > 2:3013188/1‑91 CGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTA < 1:2340493/91‑1 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT > 2:2022893/1‑91 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT < 2:1030372/91‑1 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT > 1:347053/1‑91 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACT > 2:844858/1‑91 TCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACAATAAGAGCCTACT > 2:2022921/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:3823004/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 1:1434449/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 2:3270347/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC > 2:1018216/1‑91 CAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTC < 1:1615394/91‑1 AAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCA > 1:2988777/1‑91 AAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCA > 1:2453646/1‑91 AAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCA > 2:2604259/1‑91 cAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT < 2:3934748/90‑1 AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGAAAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATGAAGAGCCTACTCAT < 2:262579/91‑1 ACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAA < 1:2010954/91‑1 ATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGT < 2:2749524/91‑1 ATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGT < 1:3692930/91‑1 tctCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACAATAAGAGCCTACTCATATTCATACCTAAGAATGTA < 1:3051248/88‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 2:2065948/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 2:3236024/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 2:1118827/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 2:2066322/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 2:3768329/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 2:3613472/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 1:66579/91‑1 TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA < 2:3105596/91‑1 gACCTGGCCGAGGCGATAGAGAGTGCTTGAGATAATTGACAGACAGAAAAGTACATTAAGAGCCTACTCGTATGCATTCCTAGGAATGTA‑A < 2:239753/90‑1 ctCCTCGCCAAGGCGATGGAGATTTCTTTATATAATTTACAGACAGAAGAGCACATCAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑A < 2:995909/89‑1 CACCTGGCCAAGGCGATAGAGATTTCTTTAGATGATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑A < 2:995808/91‑1 CACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑A < 2:1784265/91‑1 gCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATGTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑AT < 2:1105055/90‑1 ACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑AT < 2:1105094/91‑1 ACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑AT < 1:1815134/91‑1 ACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑AT < 2:2899563/91‑1 CCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATG < 1:2866070/91‑1 CCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATG < 1:19360/91‑1 CCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATG < 1:19545/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC > 1:1080144/1‑91 AGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 1:2690111/91‑1 AGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGC < 1:2153624/91‑1 GAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTGATGTACTTGTCTGTCGGTAAATTATCTAAAGAAATCTCTAGCGCC < 2:401619/91‑1 GAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCC < 1:1074816/91‑1 GAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCAATCacc < 1:3568529/91‑4 gGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCT < 2:1838423/90‑1 AGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCT < 1:930484/91‑1 AGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCT > 1:786566/1‑91 CCTACTCATATTCATTCCTGAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTG < 2:2261104/91‑1 CCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTG > 1:3614633/1‑91 CCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTG < 2:571588/91‑1 CTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGG > 2:2840291/1‑91 CTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGG > 1:1686435/1‑91 TACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGC > 2:3621307/1‑91 TACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGC < 2:925725/91‑1 TACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGC > 1:431872/1‑91 ACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC < 1:860410/91‑1 ACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCC > 1:396696/1‑91 CATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGG < 1:758322/91‑1 ATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGT > 1:2745720/1‑91 TATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < 1:894453/91‑1 TATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < 2:795835/91‑1 ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1841894‑1841996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agagcctactcatATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTTAATGTACTTTTCTGTCTGTAAATTATCTAAAGAAATCTCTATCGCCTTGGCCAGGTG < USA300TCH1516_ALE/1842015‑1841926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |