New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1841996129 (0.630)23 (0.140) 7/134 NT 18.5% intergenic (+36/+58) htrA/tyrS Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
?USA300TCH1516_ALE = 1842015 95 (0.560)intergenic (+55/+39) htrA/tyrS Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 276 total aligned reads displayed.

AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTT  >  USA300TCH1516_ALE/1841906‑1842086
                                                                                          |                                                                                          
 aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAtt                                                                                           <  1:319146/91‑1 (MQ=255)
    cGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACa                                                                                        <  1:3799797/91‑1 (MQ=255)
    cGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACa                                                                                        >  2:3113911/1‑91 (MQ=255)
     gATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAt                                                                                       >  1:2189309/1‑91 (MQ=255)
      aTCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAtt                                                                                      <  1:914572/91‑1 (MQ=255)
      aTCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAtt                                                                                      >  1:1759554/1‑91 (MQ=255)
       tCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTc                                                                                     <  2:73131/91‑1 (MQ=255)
       tCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTc                                                                                     >  1:537146/1‑91 (MQ=255)
         aGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCtt                                                                                   <  1:1338824/91‑1 (MQ=255)
          gAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTa                                                                                  >  2:2345393/1‑91 (MQ=255)
          gAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTa                                                                                  >  1:3823221/1‑91 (MQ=255)
           aaCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATAAAGAGCCTACTCATTACATTCTTAg                                                                                 <  2:101502/91‑1 (MQ=255)
                cAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatg                                                                            >  2:788246/1‑91 (MQ=255)
                cAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatg                                                                            <  1:2626484/91‑1 (MQ=255)
                cAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatg                                                                            <  2:2603085/91‑1 (MQ=255)
                 aaTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatga                                                                           <  1:3924996/91‑1 (MQ=255)
                  gtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaa                                                                          >  2:555182‑M1/61‑91 (MQ=255)
                  ataaaaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaa                                                                          >  2:2638016‑M1/61‑91 (MQ=255)
                  aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgt                                                                          <  2:2749524‑M1/91‑19 (MQ=255)
                   tctcctggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACAATAAGAGCCTACTCATattcatacctaagaatgta                                                                         <  1:3051248‑M1/88‑20 (MQ=255)
                   taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         >  1:350654‑M1/60‑91 (MQ=255)
                   taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         >  2:1845313‑M1/60‑91 (MQ=255)
                   taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         >  2:2322492‑M1/60‑91 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                                         <  2:1118827‑M1/91‑20 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                                         <  2:2065948‑M1/91‑20 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                                         <  2:3236024‑M1/91‑20 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta                                                                         <  2:3768329‑M1/91‑20 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         >  2:1441428/1‑91 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         >  2:1855836/1‑91 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         >  1:2929094/1‑91 (MQ=255)
                   tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                         <  1:1310263/91‑1 (MQ=255)
                    gacCTGGCCGAGGCGATAGAGAGTGCTTGAGATAATTGACAGACAGAAAAGTACATTAAGAGCCTACTCGTatgcattcctaggaatgtaa                                                                        <  2:239753‑M1/90‑21 (MQ=255)
                    ctcctcGCCAAGGCGATGGAGATTTCTTTATATAATTTACAGACAGAAGAGCACATCAAGAGCCTACTCATattcattcctaagaatgtaa                                                                        <  2:995909‑M1/89‑21 (MQ=255)
                    aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAata                                                                        >  2:1548723‑M1/59‑91 (MQ=255)
                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaat                                                                       <  2:2899563‑M1/91‑22 (MQ=255)
                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaat                                                                       <  1:1815134‑M1/91‑22 (MQ=255)
                     aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATat                                                                       >  1:2745720‑M2/1‑89 (MQ=255)
                      ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg                                                                      <  1:19360‑M1/91‑23 (MQ=255)
                      ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg                                                                      <  1:19545‑M1/91‑23 (MQ=255)
                      ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg                                                                      <  1:2866070‑M1/91‑23 (MQ=255)
                      ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatg                                                                      <  1:758322‑M2/91‑4 (MQ=255)
                          gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagta                                                                  >  2:3621307‑M2/1‑84 (MQ=255)
                           ccAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtag                                                                 >  2:2840291‑M2/1‑83 (MQ=255)
                              aGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggct                                                              <  1:930484‑M2/91‑12 (MQ=255)
                                   aTAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAat                                                         >  2:1675507/1‑91 (MQ=255)
                                    tAGAGATTTCTTTAGATAATTTACAGACCGAAAAGGACATTAAGGGCCTACCCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                                        <  2:1139944/91‑1 (MQ=255)
                                    tAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                                        >  1:1852897/1‑91 (MQ=255)
                                     agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                       >  1:609796/1‑91 (MQ=255)
                                     agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                       >  1:725288/1‑91 (MQ=255)
                                      gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                      <  1:331504/91‑1 (MQ=255)
                                       agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                                     <  2:3842944/91‑1 (MQ=255)
                                        gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                    <  1:3278994/91‑1 (MQ=255)
                                        gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                    <  1:149239/91‑1 (MQ=255)
                                        gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACACTCTCAGGAATGACTATGAGTACGCTCTAatttatt                                                    >  2:947129/1‑91 (MQ=255)
                                            tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc                                                <  2:2784156/91‑1 (MQ=255)
                                              tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa                                              >  2:1581905/1‑91 (MQ=255)
                                                tAGATAATTTACAGACAGAAAAGTACTTTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                            <  2:409752/91‑1 (MQ=255)
                                                tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                            >  2:2578953/1‑91 (MQ=255)
                                                    tAATTTACAGACATAAAAGTACATTAAGAGCCTTCTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAgctatgctat                                        <  2:3602267/91‑1 (MQ=255)
                                                    tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                                        <  2:1941207/91‑1 (MQ=255)
                                                    tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                                        >  1:1246475/1‑91 (MQ=255)
                                                     aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                       <  1:853418/91‑1 (MQ=255)
                                                       tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                                     <  2:140823/91‑1 (MQ=255)
                                                         tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                   <  1:1037310/91‑1 (MQ=255)
                                                            agacagaAAAGTACATTAAGAGCCTACTCATTTCATGCTTAGGAATGAATATGAGTAGGCTCTAATTTTTTTAGCTAGGCAATTAtattta                                >  2:2219725/1‑91 (MQ=255)
                                                             gacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat                               <  1:2133269/91‑1 (MQ=255)
                                                             gacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat                               <  1:3788443/91‑1 (MQ=255)
                                                                   aaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg                         <  1:2735076/91‑1 (MQ=255)
                                                                    aaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt                        >  1:190804/1‑91 (MQ=255)
                                                                     aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       >  1:3735403/1‑91 (MQ=255)
                                                                     aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       >  1:1600148/1‑91 (MQ=255)
                                                                     aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       >  2:902592/1‑91 (MQ=255)
                                                                     aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAAGATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                       >  2:3256612/1‑91 (MQ=255)
                                                                       tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                     >  2:2941164/1‑91 (MQ=255)
                                                                        aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc                    >  2:2137908/1‑91 (MQ=255)
                                                                        aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc                    >  1:1365304/1‑91 (MQ=255)
                                                                         cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                   >  1:1292535/1‑91 (MQ=255)
                                                                         cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                   >  1:1051656/1‑91 (MQ=255)
                                                                           ttAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                 >  2:62185/1‑91 (MQ=255)
                                                                             aaGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGa               <  2:329514/91‑1 (MQ=255)
                                                                             aaGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGa               <  1:2356213/91‑1 (MQ=255)
                                                                              agagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgc              >  1:1080144‑M1/1‑13 (MQ=255)
                                                                               gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttgatgtacttgtctgtcggtaaattatctaaagaaatctctagcgcc             <  2:401619‑M1/91‑80 (MQ=255)
                                                                               gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctcaatcacc             <  1:3568529‑M1/91‑80 (MQ=255)
                                                                               GAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg             >  1:259222‑M1/1‑91 (MQ=255)
                                                                                agCCTACTCATtacattcttaggaatgaatatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcct            >  1:786566‑M1/1‑11 (MQ=255)
                                                                                AGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt            <  2:2079395‑M1/91‑1 (MQ=255)
                                                                                  ccTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttg          >  1:3614633‑M1/1‑9 (MQ=255)
                                                                                   cTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttgg         >  1:1686435‑M1/1‑8 (MQ=255)
                                                                                    tACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggc        >  1:431872‑M1/1‑7 (MQ=255)
                                                                                     aCTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggcc       >  1:396696‑M1/1‑6 (MQ=255)
                                                                                     ACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt       <  2:3046663‑M1/91‑1 (MQ=255)
                                                                                     ACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt       <  1:2320837‑M1/91‑1 (MQ=255)
                                                                                        CATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc    <  1:1506566‑M1/91‑1 (MQ=255)
                                                                                         cTTACATTCTTAGGAATGGATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAGGTATTTTTTCt   >  2:2820882‑M1/2‑91 (MQ=255)
                                                                                         aTTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtacattatctaaagaaatctctatcgccttggccaggc   <  2:1105055‑M2/91‑71 (MQ=255)
                                                                                         ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt   >  2:3906903‑M1/1‑91 (MQ=255)
                                                                                         ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt   >  1:2314060‑M1/1‑91 (MQ=255)
                                                                                          ttACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtg  <  2:1784265‑M2/91‑72 (MQ=255)
                                                                                          tattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtg  <  1:894453‑M1/91‑91 (MQ=255)
                                                                                          |                                                                                          
AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTT  >  USA300TCH1516_ALE/1841906‑1842086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.