New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 1841996 | 129 (0.630) | 23 (0.140) | 7/134 | NT | 18.5% | intergenic (+36/+58) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase |
? | USA300TCH1516_ALE | = 1842015 | 95 (0.560) | intergenic (+55/+39) | htrA/tyrS | Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase |
Only 100 of 276 total aligned reads displayed.
AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTT > USA300TCH1516_ALE/1841906‑1842086 | aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAtt < 1:319146/91‑1 (MQ=255) cGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACa < 1:3799797/91‑1 (MQ=255) cGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACa > 2:3113911/1‑91 (MQ=255) gATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAt > 1:2189309/1‑91 (MQ=255) aTCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAtt < 1:914572/91‑1 (MQ=255) aTCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACAtt > 1:1759554/1‑91 (MQ=255) tCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTc < 2:73131/91‑1 (MQ=255) tCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTc > 1:537146/1‑91 (MQ=255) aGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCtt < 1:1338824/91‑1 (MQ=255) gAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTa > 2:2345393/1‑91 (MQ=255) gAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTa > 1:3823221/1‑91 (MQ=255) aaCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATAAAGAGCCTACTCATTACATTCTTAg < 2:101502/91‑1 (MQ=255) cAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatg > 2:788246/1‑91 (MQ=255) cAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatg < 1:2626484/91‑1 (MQ=255) cAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatg < 2:2603085/91‑1 (MQ=255) aaTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatga < 1:3924996/91‑1 (MQ=255) gtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaa > 2:555182‑M1/61‑91 (MQ=255) ataaaaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaa > 2:2638016‑M1/61‑91 (MQ=255) aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgt < 2:2749524‑M1/91‑19 (MQ=255) tctcctggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACAATAAGAGCCTACTCATattcatacctaagaatgta < 1:3051248‑M1/88‑20 (MQ=255) taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat > 1:350654‑M1/60‑91 (MQ=255) taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat > 2:1845313‑M1/60‑91 (MQ=255) taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat > 2:2322492‑M1/60‑91 (MQ=255) tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta < 2:1118827‑M1/91‑20 (MQ=255) tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta < 2:2065948‑M1/91‑20 (MQ=255) tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta < 2:3236024‑M1/91‑20 (MQ=255) tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgta < 2:3768329‑M1/91‑20 (MQ=255) tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat > 2:1441428/1‑91 (MQ=255) tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat > 2:1855836/1‑91 (MQ=255) tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat > 1:2929094/1‑91 (MQ=255) tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat < 1:1310263/91‑1 (MQ=255) gacCTGGCCGAGGCGATAGAGAGTGCTTGAGATAATTGACAGACAGAAAAGTACATTAAGAGCCTACTCGTatgcattcctaggaatgtaa < 2:239753‑M1/90‑21 (MQ=255) ctcctcGCCAAGGCGATGGAGATTTCTTTATATAATTTACAGACAGAAGAGCACATCAAGAGCCTACTCATattcattcctaagaatgtaa < 2:995909‑M1/89‑21 (MQ=255) aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAata > 2:1548723‑M1/59‑91 (MQ=255) aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaat < 2:2899563‑M1/91‑22 (MQ=255) aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaat < 1:1815134‑M1/91‑22 (MQ=255) aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATat > 1:2745720‑M2/1‑89 (MQ=255) ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg < 1:19360‑M1/91‑23 (MQ=255) ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg < 1:19545‑M1/91‑23 (MQ=255) ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATattcattcctaagaatgtaatg < 1:2866070‑M1/91‑23 (MQ=255) ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatg < 1:758322‑M2/91‑4 (MQ=255) gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagta > 2:3621307‑M2/1‑84 (MQ=255) ccAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtag > 2:2840291‑M2/1‑83 (MQ=255) aGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggct < 1:930484‑M2/91‑12 (MQ=255) aTAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAat > 2:1675507/1‑91 (MQ=255) tAGAGATTTCTTTAGATAATTTACAGACCGAAAAGGACATTAAGGGCCTACCCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatt < 2:1139944/91‑1 (MQ=255) tAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatt > 1:1852897/1‑91 (MQ=255) agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt > 1:609796/1‑91 (MQ=255) agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt > 1:725288/1‑91 (MQ=255) gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta < 1:331504/91‑1 (MQ=255) agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat < 2:3842944/91‑1 (MQ=255) gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt < 1:3278994/91‑1 (MQ=255) gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt < 1:149239/91‑1 (MQ=255) gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACACTCTCAGGAATGACTATGAGTACGCTCTAatttatt > 2:947129/1‑91 (MQ=255) tCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGc < 2:2784156/91‑1 (MQ=255) tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa > 2:1581905/1‑91 (MQ=255) tAGATAATTTACAGACAGAAAAGTACTTTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg < 2:409752/91‑1 (MQ=255) tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg > 2:2578953/1‑91 (MQ=255) tAATTTACAGACATAAAAGTACATTAAGAGCCTTCTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAgctatgctat < 2:3602267/91‑1 (MQ=255) tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt < 2:1941207/91‑1 (MQ=255) tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt > 1:1246475/1‑91 (MQ=255) aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt < 1:853418/91‑1 (MQ=255) tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat < 2:140823/91‑1 (MQ=255) tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat < 1:1037310/91‑1 (MQ=255) agacagaAAAGTACATTAAGAGCCTACTCATTTCATGCTTAGGAATGAATATGAGTAGGCTCTAATTTTTTTAGCTAGGCAATTAtattta > 2:2219725/1‑91 (MQ=255) gacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat < 1:2133269/91‑1 (MQ=255) gacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatttat < 1:3788443/91‑1 (MQ=255) aaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg < 1:2735076/91‑1 (MQ=255) aaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt > 1:190804/1‑91 (MQ=255) aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt > 1:3735403/1‑91 (MQ=255) aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt > 1:1600148/1‑91 (MQ=255) aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt > 2:902592/1‑91 (MQ=255) aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAAGATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt > 2:3256612/1‑91 (MQ=255) tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa > 2:2941164/1‑91 (MQ=255) aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc > 2:2137908/1‑91 (MQ=255) aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc > 1:1365304/1‑91 (MQ=255) cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc > 1:1292535/1‑91 (MQ=255) cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc > 1:1051656/1‑91 (MQ=255) ttAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt > 2:62185/1‑91 (MQ=255) aaGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGa < 2:329514/91‑1 (MQ=255) aaGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGa < 1:2356213/91‑1 (MQ=255) agagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgc > 1:1080144‑M1/1‑13 (MQ=255) gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttgatgtacttgtctgtcggtaaattatctaaagaaatctctagcgcc < 2:401619‑M1/91‑80 (MQ=255) gagCCTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctcaatcacc < 1:3568529‑M1/91‑80 (MQ=255) GAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg > 1:259222‑M1/1‑91 (MQ=255) agCCTACTCATtacattcttaggaatgaatatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgcct > 1:786566‑M1/1‑11 (MQ=255) AGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt < 2:2079395‑M1/91‑1 (MQ=255) ccTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttg > 1:3614633‑M1/1‑9 (MQ=255) cTACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttgg > 1:1686435‑M1/1‑8 (MQ=255) tACTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggc > 1:431872‑M1/1‑7 (MQ=255) aCTCATattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggcc > 1:396696‑M1/1‑6 (MQ=255) ACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt < 2:3046663‑M1/91‑1 (MQ=255) ACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt < 1:2320837‑M1/91‑1 (MQ=255) CATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc < 1:1506566‑M1/91‑1 (MQ=255) cTTACATTCTTAGGAATGGATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAGGTATTTTTTCt > 2:2820882‑M1/2‑91 (MQ=255) aTTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtacattatctaaagaaatctctatcgccttggccaggc < 2:1105055‑M2/91‑71 (MQ=255) ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt > 2:3906903‑M1/1‑91 (MQ=255) ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt > 1:2314060‑M1/1‑91 (MQ=255) ttACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtg < 2:1784265‑M2/91‑72 (MQ=255) tattcattcctaagaatgtaatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtg < 1:894453‑M1/91‑91 (MQ=255) | AAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTT > USA300TCH1516_ALE/1841906‑1842086 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |