BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1841996	129 (0.630)	23 (0.140)	7/134	NT	18.5%	intergenic (+36/+58)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1842015	95 (0.560)	23 (0.140)	7/134	NT	18.5%	intergenic (+55/+39)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 229 total aligned reads displayed.

TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTA  >  USA300TCH1516_ALE/1841925‑1842105

taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                                            >  2:1845313‑M1/60‑91 (MQ=255)

taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                                            >  1:2351874‑M1/60‑91 (MQ=255)

tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                                            >  2:1855836/1‑91 (MQ=255)

tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                                            <  1:1310263/91‑1 (MQ=255)

tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                                            >  2:526970/1‑91 (MQ=255)

tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                                            >  2:1441428/1‑91 (MQ=255)

tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGgaatgaat                                                                                            <  2:3425017/91‑1 (MQ=255)

 aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAata                                                                                           >  2:1548723‑M1/59‑91 (MQ=255)

 aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAata                                                                                           >  1:2492812‑M1/59‑91 (MQ=255)

 aagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAata                                                                                           >  1:797206‑M1/59‑91 (MQ=255)

   gaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAATATg                                                                                         >  1:379249‑M1/57‑91 (MQ=255)

   gaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAATATg                                                                                         >  1:999918‑M1/57‑91 (MQ=255)

   ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatg                                                                                         <  1:758322‑M2/91‑4 (MQ=255)

      ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagt                                                                                      <  1:860410‑M2/91‑7 (MQ=255)

       gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagta                                                                                     >  2:3621307‑M2/1‑84 (MQ=255)

       aaatacttcatggttaactatcaataaatatagttgcatagctaaataaattAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTa                                                                                     >  1:3376083‑M1/53‑91 (MQ=255)

        ccAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtag                                                                                    >  2:2840291‑M2/1‑83 (MQ=255)

         cAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTCAGGAATGAATatgagtagg                                                                                   <  2:2261104‑M2/91‑10 (MQ=255)

           aGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggct                                                                                 <  1:930484‑M2/91‑12 (MQ=255)

            ggtgattGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctc                                                                                <  1:3568529‑M2/88‑13 (MQ=255)

             gCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATatgagtaggctct                                                                               >  1:1080144‑M2/1‑78 (MQ=255)

                  agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                                          >  1:610318/1‑91 (MQ=255)

                  agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                                          >  1:586672/1‑91 (MQ=255)

                  agagATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattt                                                                          >  2:3830768/1‑91 (MQ=255)

                   gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                                                         <  1:331504/91‑1 (MQ=255)

                     gaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAatttatt                                                                       <  1:3278994/91‑1 (MQ=255)

                        ttCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAg                                                                    >  1:761684/1‑91 (MQ=255)

                          cTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCt                                                                  >  2:737788/1‑91 (MQ=255)

                           tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa                                                                 <  1:276686/91‑1 (MQ=255)

                           tttAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTa                                                                 >  2:1581905/1‑91 (MQ=255)

                             tAGATAATTTACAGACAGAAAAGTACTTTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                                               <  2:409752/91‑1 (MQ=255)

                                 tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                                                           <  2:2644232/91‑1 (MQ=255)

                                 tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                                                           <  2:1941206/91‑1 (MQ=255)

                                  aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                                                          <  1:376020/91‑1 (MQ=255)

                                    tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                                                        <  2:140823/91‑1 (MQ=255)

                                    tttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                                                        <  2:1237768/91‑1 (MQ=255)

                                     ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                                       <  1:1518931/91‑1 (MQ=255)

                                     ttACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                                                       <  1:1903154/91‑1 (MQ=255)

                                      tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                      <  1:1037310/91‑1 (MQ=255)

                                      tACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTatat                                                      <  1:1920699/91‑1 (MQ=255)

                                         agacagaAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtattta                                                   >  2:2219714/1‑91 (MQ=255)

                                                aaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg                                            >  2:2050785/1‑91 (MQ=255)

                                                aaaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg                                            <  1:2735076/91‑1 (MQ=255)

                                                 aaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt                                           <  1:1834995/91‑1 (MQ=255)

                                                 aaGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGt                                           >  1:1648702/1‑91 (MQ=255)

                                                  aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                          >  1:3821062/1‑91 (MQ=255)

                                                  aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                          >  1:3735403/1‑91 (MQ=255)

                                                  aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                          >  2:2868427/1‑91 (MQ=255)

                                                  aGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAAGATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt                                          >  2:3256612/1‑91 (MQ=255)

                                                    tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                                        >  2:2941164/1‑91 (MQ=255)

                                                    tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa                                        >  1:1249654/1‑91 (MQ=255)

                                                    tACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGCCTCTAATTTATTTAGCTATGCAATTATATGTATTGATAGTTaa                                        >  1:3960405/1‑91 (MQ=255)

                                                     aCATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAc                                       >  1:1365304/1‑91 (MQ=255)

                                                      cATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAAcc                                      >  1:1051656/1‑91 (MQ=255)

                                                       aTTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCa                                     >  1:2317303/1‑91 (MQ=255)

                                                        ttAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTACTTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCAt                                    >  2:2774163/1‑91 (MQ=255)

                                                         tAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATg                                   <  1:260395/91‑1 (MQ=255)

                                                          aaGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGa                                  <  2:329514/91‑1 (MQ=255)

                                                            GAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAg                                <  1:299829‑M1/91‑1 (MQ=255)

                                                             AGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGt                               <  2:2079395‑M1/91‑1 (MQ=255)

                                                                 TACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAttt                           >  2:1133179‑M1/1‑91 (MQ=255)

                                                                  ACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttt                          <  2:3046663‑M1/91‑1 (MQ=255)

                                                                    TCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTAtttttt                        >  1:3872144‑M1/1‑91 (MQ=255)

                                                                     cATTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccagg                       <  1:19360‑M2/91‑70 (MQ=255)

                                                                     cATTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccagg                       <  1:2866070‑M2/91‑70 (MQ=255)

                                                                     CATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTattttttt                       <  2:2798910‑M1/91‑2 (MQ=255)

                                                                     CATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTc                       <  1:1504759‑M1/91‑1 (MQ=255)

                                                                      cTTACATTCTTAGGAATGGATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAGGTATTTTTTCt                      >  2:2820882‑M1/2‑91 (MQ=255)

                                                                      aTTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggt                      <  2:1105094‑M2/91‑71 (MQ=255)

                                                                      aTTACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggt                      <  1:1815134‑M2/91‑71 (MQ=255)

                                                                      ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                      <  2:2585464‑M1/91‑1 (MQ=255)

                                                                      ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                      >  2:3906903‑M1/1‑91 (MQ=255)

                                                                      ATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCt                      >  1:2313684‑M1/1‑91 (MQ=255)

                                                                       ttACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtg                     <  2:1784265‑M2/91‑72 (MQ=255)

                                                                       ttACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaatcatctaaagaaatctctatcgccttggccaggtg                     <  2:995808‑M2/91‑72 (MQ=255)

                                                                       ttACATTCCTAGGAATGCATacgagtaggctcttaatgtacttttctgtctgtcaattatctcaagcactctctatcgcctcggccaggtc                     <  2:239753‑M2/91‑72 (MQ=255)

                                                                        tACATTCTTAGGTATGAATatgagtaggctcttattgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggaga                    <  1:3051248‑M2/91‑73 (MQ=255)

                                                                        tACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtga                    <  2:2066322‑M2/91‑73 (MQ=255)

                                                                        tACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtga                    <  2:3768329‑M2/91‑73 (MQ=255)

                                                                        tACATTCTTAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtga                    <  2:3105596‑M2/91‑73 (MQ=255)

                                                                            ttCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACcgc                >  2:3743129/1‑91 (MQ=255)

                                                                              cTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcga              <  1:2200550/91‑1 (MQ=255)

                                                                               ttAGGAATGAATatgagtaggctcttaatgtacttttctgtctgtaaattatctaaagaaatctctatcgccttggccaggtgattgacgt             <  1:2010954‑M2/91‑80 (MQ=255)

                                                                               ttAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgac             >  2:609199/1‑91 (MQ=255)

                                                                               ttAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgac             >  1:15806/1‑91 (MQ=255)

                                                                                tatgaaggaagATGAGTAGGCTCTAATTGATTTGGCTATGCAATTATATTTATTGGTAGTTAACCGTGAAGTATTTTTTCTTACCGcgacg            <  2:3220175/88‑1 (MQ=255)

                                                                                tAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacg            >  2:906936/1‑91 (MQ=255)

                                                                                tAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacg            >  1:47941/1‑91 (MQ=255)

                                                                                tAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacg            <  1:2426599/91‑1 (MQ=255)

                                                                                 aGGAATGAATATGAGTAGGCTCTAATTTATGTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGcgacga           <  1:3630422/91‑1 (MQ=255)

                                                                                  ggAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaa          <  1:1769219/91‑1 (MQ=255)

                                                                                   gaatgaatATGAGTAGGCTCTAATTTATCTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaat         >  2:2273457/1‑91 (MQ=255)

                                                                                    aatgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTTCTTCTACGaata        >  2:2836089/1‑91 (MQ=255)

                                                                                     atgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataa       <  1:308486/91‑1 (MQ=255)

                                                                                      tgaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGaataat      >  2:2542592/1‑91 (MQ=255)

                                                                                       gaatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATc     >  1:711733/1‑91 (MQ=255)

                                                                                        aatATGATGAGGCTCTAATTTATGGAGCTAGGCAAGTACATTTAGTGATAGTTAGCCATGAAGGATTTTGTCTTACCGCGACGAATAATCg    <  2:3510096/91‑1 (MQ=255)

                                                                                        aatATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCg    >  1:138920/1‑91 (MQ=255)

                                                                                         atatGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGt   >  2:665436/1‑91 (MQ=255)

                                                                                         atatGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGt   <  2:93768/91‑1 (MQ=255)

TCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATTACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAAGTATTTTTTCTTACCGCGACGAATAATCGTA  >  USA300TCH1516_ALE/1841925‑1842105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.