| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1868935 = | 198 (0.970) | 16 (0.090) | 7/142 | NT | 8.3% | intergenic (‑342/+128) | ytnP/trmB | putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase |
| ? | USA300TCH1516_ALE | 1868982 = | 180 (1.000) | intergenic (‑389/+81) | ytnP/trmB | putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase | |||||
TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1869033‑1868935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTG > USA300TCH1516_ALE/1868982‑1869071 TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG < 2:832498/91‑1TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG < 1:3846417/91‑1TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG < 2:2224554/91‑1TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG < 1:3627721/91‑1TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG > 1:3375585/1‑91TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG > 2:3759683/1‑91TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG > 1:1951996/1‑91TCATAAGTGTTTTTTCGTACTAGAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTG < 1:2859627/91‑1TCATAAGTGTTTTTTAGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGATTGATGGAAAAAGTTTTTAACTTTTCATCTG > 2:805191/1‑91 aATAAGTGTTTTTTCGTACTATAATGGTTCTATAGAGAAAGGTTCTATAATAAATCGAAATGATAGAAAAAGTTTTTAACTTTTCATCTGT < 2:1523655/90‑1 CATAAGTGTTTTTTTTTTTTTTTATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT > 2:458125/1‑91 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 2:1188028/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 2:1538656/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 1:3182541/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 1:1344781/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 1:2410746/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT > 2:1973576/1‑91 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 2:420933/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 1:895599/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT < 2:1951642/91‑1 CATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGT > 2:562178/1‑91 ATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTC < 2:3875387/91‑1 ATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTC < 1:2818700/91‑1 ATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTC < 1:2903621/91‑1 ATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTC < 2:3875341/91‑1 TAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCC > 1:1940021/1‑91 TAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCC > 1:1623762/1‑91 AAGTGTTTTTTCGTATTTTTATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCG > 2:1431217/1‑91 AAGTGTTTTTTCGTATTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAATTTTTCATCTGTCCG > 2:562464/1‑91 AAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCG < 2:2402811/91‑1 AAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCG < 1:1089311/91‑1 AAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCG > 1:2680797/1‑91 AAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCG > 2:1431314/1‑91 AAGTGTTTTTTCGTACTATAATGGTTCGATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCG < 2:548987/91‑1 AGTGTTTTTTTTTTTTTTTATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGA > 2:2082989/1‑91 GTGTTTTTTCGTTCTTTAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGAT > 2:2234705/1‑91 GTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGAT > 2:2234451/1‑91 TGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATT > 2:1619980/1‑91 GTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT < 1:2985480/91‑1 GTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT > 2:1762476/1‑91 TCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACT > 1:2376738/1‑91 GGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTA > 1:178649/1‑91 ACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATG > 2:1050406/1‑91 TGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGT > 2:1765186/1‑91 TGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGT > 1:2946988/1‑91 GGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTA > 1:3319969/1‑91 GGAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTA > 1:1745180/1‑91 GAAAAAGTTTTTAACTTTTCATCTGTCCGATTTTTTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAT > 2:83793/1‑91 GAAAAAGTTTTTAACTTTTCATCTGTCCGATTTCTTATAGAACCTTTATCTATAGAACCATTATAGTACGAAACAACACTTATGATTGTAT > 2:2834188/1‑91 GAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAT > 1:691561/1‑91 GAAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAT > 1:184605/1‑91 AAAACGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATG > 1:2300265/1‑91 AAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAACACCACTTATGATTGTATG > 2:1262979/1‑91 AAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATG > 2:458587/1‑91 AAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATG > 1:1704434/1‑91 AAAAAGTTTTTAACTTTTCATCTGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATG > 1:2300294/1‑91 GTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTC < 1:3480557/91‑1 GTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTC < 1:1084333/91‑1 GTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTC < 2:3380978/91‑1 GTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTC < 1:2937845/91‑1 CCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTA < 2:2821043/91‑1 CCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTA < 1:174879/91‑1 CGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTAT < 2:3432932/91‑1 GATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATT < 1:376094/91‑1 GATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATT < 1:2578145/91‑1 GATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATT < 1:376195/91‑1 GATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATT > 1:3886317/1‑91 GATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATT > 1:2064631/1‑91 ATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCGTCATAAGTGCTCTATTT > 1:3389173/1‑91 ATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTT > 1:1045673/1‑91 ATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTT > 2:434978/1‑91 ATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTT > 2:1041727/1‑91 TTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTT < 1:297857/91‑1 TATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTG < 2:2461905/91‑1 TATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCATCATAAGTGCTCTATTTTTG > 2:2393965/1‑91 TCATAAGTGTTTTTTCGTACTATAATGGTTCTATAGATAAAGGTTCTATAATAAATCGGACTGATGGAAAAAGTTTTTAACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1869033‑1868935‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTG > USA300TCH1516_ALE/1868982‑1869071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |