BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1868935 =	198 (0.970)	16 (0.090)	7/142	NT	8.3%	intergenic (‑342/+128)	ytnP/trmB	putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase
*	?	USA300TCH1516_ALE	1868982 =	180 (1.000)	16 (0.090)	7/142	NT	8.3%	intergenic (‑389/+81)	ytnP/trmB	putative quorum‑quenching lactonase YtnP/tRNA (guanine‑N(7)‑)‑methyltransferase

Only 100 of 291 total aligned reads displayed.

TAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTG  >  USA300TCH1516_ALE/1868892‑1869071

  aTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttatt                                                                                         >  2:3073217/1‑91 (MQ=255)

  aTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttatt                                                                                         >  1:1574675/1‑91 (MQ=255)

  aTTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttatt                                                                                         >  1:2496020/1‑91 (MQ=255)

   ttATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATttatta                                                                                        <  1:1714382/91‑1 (MQ=255)

    tataGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTtattat                                                                                       >  2:1121109/1‑91 (MQ=255)

    tataGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTtattat                                                                                       <  2:3563588/91‑1 (MQ=255)

    tataGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTtattat                                                                                       >  1:535577/1‑91 (MQ=255)

    tataGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTtattat                                                                                       <  2:2035849/91‑1 (MQ=255)

      taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCAGATTTATTATAg                                                                                     <  1:3038380/91‑1 (MQ=255)

      taGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTGTTTCCATCAGTCCGATTTATTATAg                                                                                     >  2:3418632/1‑91 (MQ=255)

       agagATAATTGCGCTTTTTTTATATTCAATATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGa                                                                                    <  2:1835466/91‑1 (MQ=255)

         agaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAc                                                                                  <  1:3725514/91‑1 (MQ=255)

          gaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAcc                                                                                 <  1:2334501/91‑1 (MQ=255)

          gaTAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAAcc                                                                                 >  2:2217990/1‑91 (MQ=255)

              aTTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCtttt                                                                             >  2:2779411/1‑90 (MQ=255)

              aTTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTa                                                                             <  2:2137288/91‑1 (MQ=255)

               ttGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTAt                                                                            <  1:2600872/91‑1 (MQ=255)

                tGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATc                                                                           <  1:3291107/91‑1 (MQ=255)

                tGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATc                                                                           <  1:2270867/91‑1 (MQ=255)

                tGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATc                                                                           <  1:1933159/91‑1 (MQ=255)

                tGCGCTTTTTTTATATACAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATc                                                                           <  2:178123/91‑1 (MQ=255)

                 gcgcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCt                                                                          <  1:2322505/91‑1 (MQ=255)

                   gcTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtat                                                                        <  1:1229109/91‑1 (MQ=255)

                    cTTTTTTTTTATTTAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtata                                                                       >  2:470176/1‑91 (MQ=255)

                    cTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtata                                                                       >  1:1625428/1‑91 (MQ=255)

                    cTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCtata                                                                       >  2:2539800/1‑91 (MQ=255)

                     tttttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAg                                                                      <  2:3595255/91‑1 (MQ=255)

                      ttttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGa                                                                     <  1:2410073/91‑1 (MQ=255)

                        ttttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAAc                                                                   >  1:216224/1‑91 (MQ=255)

                         tttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAAcc                                                                  <  1:700241/91‑1 (MQ=255)

                          ttATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCa                                                                 >  1:3429339/1‑91 (MQ=255)

                           tataTTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAt                                                                >  2:2589424/1‑91 (MQ=255)

                           tataTTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAt                                                                <  2:2585105/91‑1 (MQ=255)

                            atatTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAtt                                                               <  1:2189450/91‑1 (MQ=255)

                            atatTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAtt                                                               >  2:1087179/1‑91 (MQ=255)

                               ttCAAAATCAAAAAATCGGGCAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATtata                                                            <  1:1135202/91‑1 (MQ=255)

                                tcaaaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAg                                                           <  1:1066877/91‑1 (MQ=255)

                                 caaaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGt                                                          <  1:3475220/91‑1 (MQ=255)

                                 caaaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGt                                                          >  2:1999966/1‑91 (MQ=255)

                                   aaatcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTAc                                                        <  1:1179144/91‑1 (MQ=255)

                                     atcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGa                                                      <  1:3094659/91‑1 (MQ=255)

                                     atcaaaaAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGa                                                      <  2:3365407/91‑1 (MQ=255)

                                        aaaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaa                                                   <  1:2227945/91‑1 (MQ=255)

                                         aaaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaaa                                                  >  2:1747552/1‑91 (MQ=255)

                                          aaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaaaa                                                 >  1:3615840/1‑91 (MQ=255)

                                          aaaaTCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGaaaaaa                                                 >  1:468586/1‑91 (MQ=255)

                                             ATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAacac                                              >  2:2234451‑M1/1‑91 (MQ=255)

                                               CGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACtt                                            >  1:2680797‑M1/1‑91 (MQ=255)

                                               CGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATAAAAATACGAAAAAACACtt                                            >  2:1431217‑M1/1‑91 (MQ=255)

                                               CGGACAGATGAAAAATTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAATACGAAAAAACACtt                                            >  2:562464‑M1/1‑91 (MQ=255)

                                                 GACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTAt                                          <  2:3875341‑M1/91‑1 (MQ=255)

                                                  actgatggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                         >  2:1050406‑M2/41‑91 (MQ=255)

                                                  ACAGATGAAAAGTTAAAAACTTTTTCTATCATTTCGATTTATTATAGAACCTTTCTCTATAGAACCATTATAGTACGAAAAAACACTTatt                                         <  2:1523655‑M1/91‑2 (MQ=255)

                                                  ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                         <  1:3182541‑M1/91‑1 (MQ=255)

                                                  ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                         <  1:1344781‑M1/91‑1 (MQ=255)

                                                  ACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATg                                         <  2:420933‑M1/91‑1 (MQ=255)

                                                   CAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTCTAGTACGAAAAAACACTTATGa                                        <  1:2859627‑M1/91‑1 (MQ=255)

                                                   CAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGa                                        >  2:3759683‑M1/1‑91 (MQ=255)

                                                   CAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGa                                        >  1:3375585‑M1/1‑91 (MQ=255)

                                                    aGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAt                                       <  1:651980/91‑1 (MQ=255)

                                                     gATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAtt                                      >  1:3535987/1‑91 (MQ=255)

                                                      aTGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTg                                     <  1:583374/91‑1 (MQ=255)

                                                      aTGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTg                                     <  1:918023/91‑1 (MQ=255)

                                                        ggaaaaagtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTa                                   >  1:1745180‑M2/35‑91 (MQ=255)

                                                        gAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTa                                   <  1:1002895/91‑1 (MQ=255)

                                                         gaaaaagtttttaacttttcatctgtccgatttTTTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAt                                  >  2:83793‑M2/34‑91 (MQ=255)

                                                         gaaaaagtttttaacttttcatctgtccgatttCTTATAGAACCTTTATCTATAGAACCATTATAGTACGAAACAACACTTATGATTGTAt                                  >  2:2834188‑M2/34‑91 (MQ=255)

                                                         aaaaGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAt                                  >  1:1106238/1‑91 (MQ=255)

                                                          aaaacgtttttaacttttcatctgtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAtg                                 >  1:2300265‑M2/33‑91 (MQ=255)

                                                          aaaGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATAAAAATACGAAAAAACACTTATGATTGTAtg                                 <  2:2891029/91‑1 (MQ=255)

                                                           aaGTTAAAAACTTTTTCCATCAGTCCGACTTATTACAGAACCTTTATCCATAGACCCATCATAGTACGAAAAAACACTTATGATTGTAtgt                                >  2:712572/1‑91 (MQ=255)

                                                             gTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTGATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAtgtac                              <  2:450312/91‑3 (MQ=255)

                                                               tAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTAtgtacac                            <  1:380140/91‑5 (MQ=255)

                                                               tAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTAc                            >  1:3099819/1‑91 (MQ=255)

                                                               tAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTAc                            >  1:890167/1‑91 (MQ=255)

                                                                aaaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACa                           <  1:880084/91‑1 (MQ=255)

                                                                aaaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACa                           <  2:3658374/91‑1 (MQ=255)

                                                                aaaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACa                           <  1:1767719/91‑1 (MQ=255)

                                                                 aaaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACAt                          >  2:292309/1‑91 (MQ=255)

                                                                  aaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATa                         <  1:1093203/91‑1 (MQ=255)

                                                                  aaaCTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATa                         <  2:1014381/91‑1 (MQ=255)

                                                                   aaCTTTTTCCATCTTTCCGATTTATTATAGAACCTTTCTCTATAGAACCATTATAGTACGAAAACACACTTATGATTGTATGTGTAAATAc                        >  2:1331376/1‑91 (MQ=38)

                                                                     cTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATAccc                      <  1:27786/91‑1 (MQ=255)

                                                                      tttttCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCt                     <  2:1206485/91‑1 (MQ=255)

                                                                      tttttCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCt                     >  2:788604/1‑91 (MQ=255)

                                                                       ttttCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTc                    >  2:2452209/1‑91 (MQ=255)

                                                                         ttCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCAt                  <  1:1119030/91‑1 (MQ=255)

                                                                          tCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCAAAATAGAAAAAAAAAACACTTATGATTGTATGTGTACATACCCTCATa                 <  2:3468079/91‑1 (MQ=38)

                                                                           ccATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAGGGTATGTACACATACAATCATaa                <  2:3243144/91‑1 (MQ=25)

                                                                           ccATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAGGGTATGTACACATACAATCATaa                <  1:1801773/91‑1 (MQ=25)

                                                                            cATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGAGGGTATGTACACATACAATCATAAg               <  2:1927261/91‑1 (MQ=21)

                                                                              tCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTg             <  1:970040/91‑1 (MQ=255)

                                                                               cAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGc            <  1:3927493/91‑1 (MQ=255)

                                                                               cAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGCGTACATACCCTCATAAGTGc            <  1:1644332/91‑1 (MQ=255)

                                                                                 gtccgatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGctc          <  1:2937845‑M2/82‑1 (MQ=255)

                                                                                     gatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTAtt      >  1:2064631‑M2/6‑91 (MQ=255)

                                                                                     gatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTAtt      <  1:376195‑M2/86‑1 (MQ=255)

                                                                                     gatttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTAtt      >  1:3886317‑M2/6‑91 (MQ=255)

                                                                                       tttATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTAtttt    <  1:297857‑M2/88‑1 (MQ=255)

                                                                                         tATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCATCATAAGTGCTCTATTTTTg  >  2:2393965‑M2/2‑91 (MQ=255)

TAATTATAGAGATAATTGCGCTTTTTTTATATTCAAAATCAAAAAATCGGACAGATGAAAAGTTAAAAACTTTTTCCATCAGTCCGATTTATTATAGAACCTTTATCTATAGAACCATTATAGTACGAAAAAACACTTATGATTGTATGTGTACATACCCTCATAAGTGCTCTATTTTTG  >  USA300TCH1516_ALE/1868892‑1869071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.