| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1908173 = | 237 (1.160) | 27 (0.140) | 16/148 | NT | 11.3% | intergenic (+392/+48) | USA300HOU_RS09450/tal | hypothetical protein/Transaldolase |
| ? | USA300TCH1516_ALE | 1908206 = | 206 (1.090) | intergenic (+425/+15) | USA300HOU_RS09450/tal | hypothetical protein/Transaldolase | |||||
AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1908268‑1908173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA > USA300TCH1516_ALE/1908206‑1908294 AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGG < 2:228829/91‑1 AGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGG > 1:2962614/1‑91 AGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGG > 1:2962613/1‑91 AGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGG > 1:2446808/1‑91 AGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGG < 1:1906342/91‑1 AGGCTTTGCGAAAGATATTCAATCTTCAGGTCTCTCTATTCTCTCATATATAAATATATTTAAACCCTCATAGGCATTGCGCTTATGGGGG > 2:3735645/1‑91 GGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGT > 1:1091785/1‑91 GGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGT > 2:2431651/1‑91 GGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGT < 1:674243/91‑1 GGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGT < 1:2591406/91‑1 GCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACTCTCATAGGCATTGTGCTTATGGGGGTT > 2:1543465/1‑91 GCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTT < 2:1387331/91‑1 CTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTat > 1:109105/1‑89 CTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT > 2:3773258/1‑91 CTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT > 1:1774694/1‑91 CTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT > 2:1806979/1‑91 AGGTCTTTCTATTCTATAATATATAAATATATTTAAACTCTCCTAGGCATTGTGCTTATGAGGGGTTAAATATATTTATATATTATTGAAT > 1:2645194/1‑91 AGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAAT > 1:1327975/1‑91 ATTCTATAATATATAAATATATTTAAACCCTCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCT < 1:2641796/91‑1 TTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCA > 2:2951078/1‑91 TTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAA > 1:3203158/1‑91 TTAAACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAA > 1:3796667/1‑91 TAAATCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTCAAGAATAGAAAGATCTGATGATTGAATATCTTTCGCAAA > 2:1076035/1‑91 AACCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGC > 2:832762/1‑91 CCCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCT > 2:2186721/1‑91 CCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTT > 1:3893375/1‑91 CCTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTT > 1:3893343/1‑91 CTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTT > 2:1229432/1‑91 CTCATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTT > 2:2295903/1‑91 CATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAA > 1:3263026/1‑91 ATAGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATCGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAAC > 2:3159207/1‑91 ATAGGCATTGTGCTTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAAC > 2:1903468/1‑91 AGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATCGAATAGAAAGACCTGACGATTGAATATCTTTCGCACAGCCTTTAACTG > 2:3285085/1‑91 AGGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTG > 2:1868795/1‑91 GGCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGT > 2:2703595/1‑91 GCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTA > 1:1313894/1‑91 GCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTA > 1:1313850/1‑91 GCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTA > 1:1407099/1‑91 GCATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTA > 1:1718904/1‑91 CATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTAT > 2:3542024/1‑91 CATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTAT > 2:967565/1‑91 ATTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATC > 2:2749869/1‑91 TTGTGCTTATGGGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCT > 1:90046/1‑91 GGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCG < 2:55834/91‑1 GGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCG < 2:55799/91‑1 GGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCG < 1:247410/91‑1 GGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCGTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCG > 2:3111063/1‑91 GGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGT > 2:2232611/1‑91 GGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGT > 2:1470095/1‑91 GTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTT < 2:1947760/91‑1 GTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTT > 2:1099186/1‑91 TTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTA > 1:3944853/1‑91 TTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTA > 1:1666762/1‑91 TTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTA < 1:2933956/91‑1 TTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTA > 2:2000488/1‑91 TTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTA > 2:2000487/1‑91 TTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGGTTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA > 1:2297443/1‑91 TTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA > 2:3383916/1‑91 TTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA > 1:2837419/1‑91 TTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA > 1:2297506/1‑91 TTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA > 2:1271708/1‑91 AAAGGCTTTGCGAAAGATATTCAATCTTCAGGTCTTTCTATTCTATAATATATAAATATATTTAAACCCTCATAGGCATTGTGCTTATGGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1908268‑1908173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAA > USA300TCH1516_ALE/1908206‑1908294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |