BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1908173 =	237 (1.160)	27 (0.140)	16/148	NT	11.3%	intergenic (+392/+48)	USA300HOU_RS09450/tal	hypothetical protein/Transaldolase
*	?	USA300TCH1516_ALE	1908206 =	206 (1.090)	27 (0.140)	16/148	NT	11.3%	intergenic (+425/+15)	USA300HOU_RS09450/tal	hypothetical protein/Transaldolase

Only 100 of 307 total aligned reads displayed.

CTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAATA  >  USA300TCH1516_ALE/1908116‑1908296

cTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTa                                                                                            <  1:3722530/91‑1 (MQ=255)

 ttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAGGGTTTaa                                                                                           >  1:3796667‑M1/57‑91 (MQ=255)

 ttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAGGGTTTaa                                                                                           >  1:3203158‑M1/57‑91 (MQ=255)

 tCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTaa                                                                                           >  1:514994/1‑91 (MQ=255)

  tgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAGGGTTTaaa                                                                                          >  2:2951078‑M1/56‑91 (MQ=255)

  cGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTaaa                                                                                          <  1:3521944/91‑1 (MQ=255)

  cGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTaaa                                                                                          <  2:514211/91‑1 (MQ=255)

   gAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCTCATAAGCACAATGCCTATGAGGGTTTAAat                                                                                         >  2:2747815/1‑91 (MQ=255)

       ttttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAatatat                                                                                     >  2:1465786/1‑91 (MQ=255)

        tttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAtt                                                                                    <  2:2418845/91‑1 (MQ=255)

        tttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAtt                                                                                    <  1:1842562/91‑1 (MQ=255)

         ttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAttt                                                                                   >  2:1105285/1‑91 (MQ=255)

         ttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAttt                                                                                   >  1:1333226/1‑91 (MQ=255)

         ttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAttt                                                                                   >  1:1721781/1‑91 (MQ=255)

          tACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTta                                                                                  <  1:3875322/91‑1 (MQ=255)

          tACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTta                                                                                  >  2:1998904/1‑91 (MQ=255)

          tACTTAGCTGAATTTTGACTTCTCCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTta                                                                                  >  1:1374228/1‑91 (MQ=255)

           aCTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtat                                                                                 <  1:312251/91‑1 (MQ=255)

             ttAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGAGGGAAAAACCCCCATAAGCACACTGCCTATGAGGGATTAAATCTATTtatat                                                                               >  2:3773913/1‑91 (MQ=255)

              tAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtatata                                                                              >  1:3537437/1‑91 (MQ=255)

                 cTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATAtatta                                                                           <  1:91045/91‑1 (MQ=255)

                  tGAATTTTGACTTCTTCTTCAGTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATAtattat                                                                          <  2:1234676/91‑1 (MQ=255)

                   gAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATtata                                                                         <  2:748959/91‑1 (MQ=255)

                   gAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATtata                                                                         <  1:1286231/91‑1 (MQ=255)

                      ttttGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaa                                                                      <  1:3570854/91‑1 (MQ=255)

                      ttttGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaa                                                                      >  1:3608548/1‑91 (MQ=255)

                      ttttGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaa                                                                      <  2:2264908/91‑1 (MQ=255)

                          gACTTCTTCTTCATTAATAACTCTGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaataga                                                                  <  2:3186903/91‑1 (MQ=255)

                          gACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaataga                                                                  >  2:3480664/1‑91 (MQ=255)

                           aCTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTAtagaatagaa                                                                 >  2:3391110/1‑91 (MQ=255)

                           aCTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTAtagaatagaa                                                                 >  2:3690049/1‑91 (MQ=255)

                           aCTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTAtagaatagaa                                                                 <  1:3189914/91‑1 (MQ=255)

                             ttcttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAg                                                               >  1:1899848/1‑91 (MQ=255)

                               cttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGAc                                                             <  1:213649/91‑1 (MQ=255)

                                ttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGAcc                                                            <  1:2786796/91‑1 (MQ=255)

                                 tcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCt                                                           >  2:40936/1‑91 (MQ=255)

                                 attctataatatataaatatatttaaaccctcataagcacaatgcctatgagggtttAAATATATTTATATATTATAGAATAGAAAGACCt                                                           <  1:2641796‑M2/34‑1 (MQ=255)

                                  cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg                                                          <  2:3575328/91‑1 (MQ=255)

                                  cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg                                                          <  1:3391867/91‑1 (MQ=255)

                                  cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg                                                          <  1:1567053/91‑1 (MQ=255)

                                  cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg                                                          <  1:1262568/91‑1 (MQ=255)

                                  cgtcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg                                                          <  2:233273/89‑1 (MQ=255)

                                   ttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGa                                                         >  2:148391/1‑91 (MQ=255)

                                     cATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAg                                                       <  1:3849507/91‑1 (MQ=255)

                                      aTTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGa                                                      >  1:2722250/1‑91 (MQ=255)

                                        taataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGAtt                                                    >  1:998315/1‑91 (MQ=255)

                                        taataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGAtt                                                    >  2:2102241/1‑91 (MQ=255)

                                         aataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTg                                                   <  1:3906650/91‑1 (MQ=255)

                                         aataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTg                                                   <  1:2029434/91‑1 (MQ=255)

                                          ataaCTATGATGGAAAAACCCCCATAAGCGCGATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGa                                                  <  2:2997880/91‑1 (MQ=255)

                                             aCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAata                                               >  1:2655756/1‑91 (MQ=255)

                                              cTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAatat                                              <  1:774921/91‑1 (MQ=255)

                                               tATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATc                                             <  1:1175304/91‑1 (MQ=255)

                                                atgatgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCt                                            >  1:1433239/1‑91 (MQ=255)

                                                 tgatgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCtt                                           <  2:1827353/91‑1 (MQ=255)

                                                  gatgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCttt                                          <  1:2571200/91‑1 (MQ=255)

                                                   atgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTc                                         >  1:3473680/1‑91 (MQ=255)

                                                   atgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTc                                         >  1:2400494/1‑91 (MQ=255)

                                                     ggAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGc                                       <  2:798528/91‑1 (MQ=255)

                                                        taaatcctcataggcattgtgcttatgggggtttAAATATATTTATATATTCAAGAATAGAAAGATCTGATGATTGAATATCTTTCGCaaa                                    >  2:1076035‑M2/35‑91 (MQ=255)

                                                         atACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAg                                   >  1:109105‑M1/3‑91 (MQ=255)

                                                         AAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAg                                   >  1:1774694‑M1/1‑91 (MQ=255)

                                                           ACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGcc                                 <  1:674243‑M1/91‑1 (MQ=255)

                                                            CCCCCATAAGCGCAATGCCTATGAGGGTTTAAATATATTTATATATGAGAGAATAGAGAGACCTGAAGATTGAATATCTTTCGCAAAGCCt                                >  2:3735645‑M1/1‑91 (MQ=255)

                                                            CCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCt                                >  1:2962614‑M1/1‑91 (MQ=255)

                                                              CCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCttt                              <  2:228829‑M1/91‑1 (MQ=255)

                                                               ccATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCATTa                             >  1:3061668/1‑91 (MQ=255)

                                                                cATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTaa                            >  1:473971/1‑91 (MQ=255)

                                                                 aTAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAAc                           >  2:356652/1‑91 (MQ=255)

                                                                   aggcattgtgcttatgggggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTg                         >  2:1868795‑M2/24‑91 (MQ=255)

                                                                   aaGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCACAGCCTTTAACTg                         <  2:1575614/91‑1 (MQ=255)

                                                                     gcattgtgcttatgggggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTa                       >  1:1313894‑M2/22‑91 (MQ=255)

                                                                     gCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTa                       <  1:2923498/91‑1 (MQ=255)

                                                                      cacaATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTAt                      <  2:1750392/91‑1 (MQ=255)

                                                                      cacaATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTAt                      >  2:126523/1‑91 (MQ=255)

                                                                      cacaATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTAt                      >  1:2119512/1‑91 (MQ=255)

                                                                       acaATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATc                     >  2:3867076/1‑91 (MQ=255)

                                                                       acaATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATc                     <  2:2822127/91‑1 (MQ=255)

                                                                            gCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTg                >  2:847940/1‑91 (MQ=255)

                                                                            gCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTg                <  1:1623836/91‑1 (MQ=255)

                                                                             ccTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGa               <  2:1293788/91‑1 (MQ=255)

                                                                             ccTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGa               <  1:3277087/91‑1 (MQ=255)

                                                                             ccTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGa               <  1:846106/91‑1 (MQ=255)

                                                                             ccTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGa               <  1:1045912/91‑1 (MQ=255)

                                                                             ccTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGa               <  2:2543678/91‑1 (MQ=255)

                                                                             ccTATGAGGGTTTAAATATATTTATATAATATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGa               <  2:1389078/91‑1 (MQ=255)

                                                                               tATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATa             >  1:58824/1‑91 (MQ=255)

                                                                               tATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATa             <  1:1186800/91‑1 (MQ=255)

                                                                                aTGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATaa            <  2:2614658/91‑1 (MQ=255)

                                                                                  gAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAAtt          >  2:2925726/1‑91 (MQ=255)

                                                                                  gAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAAtt          >  1:2292548/1‑91 (MQ=255)

                                                                                  gAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAAtt          >  1:3002478/1‑91 (MQ=255)

                                                                                  gAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAAtt          >  1:3501245/1‑91 (MQ=255)

                                                                                    gggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCg        <  1:247410‑M2/85‑1 (MQ=255)

                                                                                    gggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCg        <  2:55834‑M2/85‑1 (MQ=255)

                                                                                    gggtttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCGTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCg        >  2:3111063‑M2/7‑91 (MQ=255)

                                                                                       tttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTa     >  2:2000488‑M2/4‑91 (MQ=255)

                                                                                       tttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTa     >  1:1666762‑M2/4‑91 (MQ=255)

                                                                                        ttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTaa    >  1:2297506‑M2/3‑91 (MQ=255)

                                                                                        ttAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTaa    >  1:2837419‑M2/3‑91 (MQ=255)

CTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAGCCTTTAACTGTATCTACTGATAATTCGTTAATA  >  USA300TCH1516_ALE/1908116‑1908296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.