| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1908173 = | 237 (1.160) | 27 (0.140) | 16/148 | NT | 11.3% | intergenic (+392/+48) | USA300HOU_RS09450/tal | hypothetical protein/Transaldolase |
| ? | USA300TCH1516_ALE | 1908206 = | 206 (1.090) | intergenic (+425/+15) | USA300HOU_RS09450/tal | hypothetical protein/Transaldolase | |||||
Only 100 of 308 total aligned reads displayed.
ACTCCTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAG > USA300TCH1516_ALE/1908083‑1908263 | taacgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttaaa > 1:3944853‑M1/89‑91 (MQ=255) taacgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttaaa > 2:2000487‑M1/89‑91 (MQ=255) tCCTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGaaaaa < 1:286332/91‑1 (MQ=255) tCCTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGaaaaa < 1:1671340/91‑1 (MQ=255) aacgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAAc < 2:1947760‑M1/4‑1 (MQ=255) aacgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAAc > 2:1099186‑M1/88‑91 (MQ=255) cTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAAcc < 1:1238267/91‑1 (MQ=255) acgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAAcc > 2:2232611‑M1/87‑91 (MQ=255) acgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAAcc > 2:1470095‑M1/87‑91 (MQ=255) tGTTGAATCAATTTAGACTTTTTTATTTCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAAccc > 2:3628178/1‑91 (MQ=255) tGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAAccc > 2:1040748/1‑91 (MQ=255) cgaattatcagtagatacagttaaaggctttgcgaacgatattcaatcttcaggtctttctattctataatatataaatatatttAAAccc > 2:3111063‑M1/86‑91 (MQ=255) cgaattatcagtagatacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAAccc < 2:55834‑M1/6‑1 (MQ=255) gAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAATCCACAt > 2:1638238/1‑91 (MQ=255) aaTCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATa < 2:1158541/91‑1 (MQ=255) aTCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATaa > 1:1461887/1‑91 (MQ=255) cAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAGACCCCCATAAGc > 1:74004/1‑91 (MQ=255) cAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGc > 2:2567452/1‑91 (MQ=255) aaTTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGca < 2:1276330/91‑1 (MQ=255) aaTTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGca > 2:1829342/1‑91 (MQ=255) aTTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGcac > 1:2301606/1‑91 (MQ=255) tttAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGcaca < 2:786917/91‑1 (MQ=255) ttAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACaa < 2:2960170/91‑1 (MQ=255) aGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATg < 1:1793518/91‑1 (MQ=255) tacagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGc > 1:1407099‑M1/71‑91 (MQ=255) gACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGc < 1:3706125/91‑1 (MQ=255) cagttaaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCt > 2:1868795‑M1/69‑91 (MQ=255) cTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCt < 1:832604/91‑1 (MQ=255) tttttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTAt > 2:2102474/1‑91 (MQ=255) ttttATAACTCTAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATg > 2:2993614/1‑91 (MQ=255) ttttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATg < 1:1609099/91‑1 (MQ=255) ttttATAACGCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATg < 2:353059/91‑1 (MQ=255) ttATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAg < 1:1808832/91‑1 (MQ=255) aaaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAg > 2:1229432‑M1/64‑91 (MQ=255) tataACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAgg > 2:1368214/1‑91 (MQ=255) tataACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAgg < 2:2595727/91‑1 (MQ=255) aaggctttgcgaaagatattcaatcttcaggtctttctattctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAgg > 1:3893343‑M1/63‑91 (MQ=255) aaCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGtt < 1:1127056/91‑1 (MQ=255) aaCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGtt < 1:2177879/91‑1 (MQ=255) aCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGttt > 2:1790231/1‑91 (MQ=255) aCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGttt < 2:1714179/91‑1 (MQ=255) aCTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGttt < 1:1877834/91‑1 (MQ=255) tCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTaa > 1:514994/1‑91 (MQ=255) cGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTaaa > 1:3474333/1‑91 (MQ=255) cGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTaaa < 2:514211/91‑1 (MQ=255) gAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCTCATAAGCACAATGCCTATGAGGGTTTAAat > 2:2747815/1‑91 (MQ=255) gAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATACGCACAATGCCTATGAGGGTTTAAat > 1:3667340/1‑91 (MQ=255) aGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAata > 2:293642/1‑91 (MQ=255) aGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAata > 1:3860956/1‑91 (MQ=255) gCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAatat > 1:105230/1‑91 (MQ=255) cTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAatata > 2:2282695/1‑91 (MQ=255) ttttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAatatat > 2:1430482/1‑91 (MQ=255) tttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAtt < 2:2418845/91‑1 (MQ=255) tttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAtt < 1:1842562/91‑1 (MQ=255) ttACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATAttt > 1:1721781/1‑91 (MQ=255) tACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTta > 1:1374197/1‑91 (MQ=255) aCTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtat < 1:312251/91‑1 (MQ=255) aCTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtat < 1:3767807/91‑1 (MQ=255) ttAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtatat < 1:3310272/91‑1 (MQ=255) ttAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtatat < 1:3807610/91‑1 (MQ=255) tAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtatata > 2:2074808/1‑91 (MQ=255) tAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTtatata > 1:3537437/1‑91 (MQ=255) ttaaTTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATAtattat < 2:1234973/89‑1 (MQ=255) gAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATtata < 2:748959/91‑1 (MQ=255) gAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATtata < 1:1286303/91‑1 (MQ=255) ttttGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaa < 1:3570854/91‑1 (MQ=255) gACTTCTTCTTCATTAATAACTCTGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaataga < 2:3186903/91‑1 (MQ=255) gACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaataga > 2:3862540/1‑91 (MQ=255) gACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaataga > 1:1178004/1‑91 (MQ=255) gACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTatagaataga < 2:2783245/91‑1 (MQ=255) aCTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTAtagaatagaa < 2:357334/91‑1 (MQ=255) aCTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTAtagaatagaa > 2:3391127/1‑91 (MQ=255) aCTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTAtagaatagaa > 2:3300281/1‑91 (MQ=255) aCTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTAtagaatagaa < 1:3189932/91‑1 (MQ=255) ttcttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAg > 1:1899848/1‑91 (MQ=255) cttcttcATTACTAACTATGATGCAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTTAATATATTTATATATTATAGAATAGAAAGAc < 2:3025430/91‑1 (MQ=255) cttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGAc < 1:213649/91‑1 (MQ=255) ttcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGAcc < 1:2786796/91‑1 (MQ=255) tcttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCt > 2:40936/1‑91 (MQ=255) attctataatatataaatatatttAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCt > 1:1327975‑M1/25‑91 (MQ=255) attcaataatatataaatatatttAACCCCTCATAAGCACAATGCCTAGGAGAGTTTAAATATATTTATATATTATAGAATAGAAAGACCt > 1:2645194‑M1/25‑91 (MQ=255) cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg < 1:1567053/91‑1 (MQ=255) cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg < 1:126372/91‑1 (MQ=255) cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg < 1:2073256/91‑1 (MQ=255) cttcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg < 2:3575425/91‑1 (MQ=255) cgtcATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTg < 2:233273/89‑1 (MQ=255) aTTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGa > 1:919455/1‑91 (MQ=255) aTTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGa > 1:2722250/1‑91 (MQ=255) taataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGAtt > 1:998370/1‑91 (MQ=255) aataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTg < 1:2029434/91‑1 (MQ=255) ataaCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGa > 1:570540/1‑91 (MQ=255) aCTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAata > 1:2655756/1‑91 (MQ=255) atgatgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCt > 1:634304/1‑91 (MQ=255) tgatgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCtt > 1:2996869/1‑91 (MQ=255) gatgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCttt < 1:2571200/91‑1 (MQ=255) atgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTc > 1:2400494/1‑91 (MQ=255) atgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTc > 1:3473428/1‑91 (MQ=255) tgGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCg < 1:2550658/91‑1 (MQ=255) ggAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGc < 2:798528/91‑1 (MQ=255) AAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAg > 2:3773258‑M1/1‑91 (MQ=255) | ACTCCTGTTGAATCAATTTAGACTTTTTTATAACTCGAGCTTTTACTTAGCTGAATTTTGACTTCTTCTTCATTAATAACTATGATGGAAAAACCCCCATAAGCACAATGCCTATGAGGGTTTAAATATATTTATATATTATAGAATAGAAAGACCTGAAGATTGAATATCTTTCGCAAAG > USA300TCH1516_ALE/1908083‑1908263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |