| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1928296 | 216 (1.060) | 12 (0.070) | 9/140 | NT | 5.4% | intergenic (‑250/+51) | USA300HOU_RS09565/USA300HOU_RS09575 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1928318 | 228 (1.280) | intergenic (‑272/+29) | USA300HOU_RS09565/USA300HOU_RS09575 | hypothetical protein/hypothetical protein | |||||
CCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1928198‑1928296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctatgaaGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA < USA300TCH1516_ALE/1928318‑1928229 CCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATG < 1:719190/91‑1CCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATG > 1:3383677/1‑91 GCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGC > 1:910793/1‑91 CTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCGATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCT < 2:832067/91‑1 CTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCACTTTTTTACTTCATGCTCTTTTAAAAAATGGCT > 2:1398166/1‑91 CTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCT > 1:1839998/1‑91 CTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCT > 1:1840011/1‑91 CTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCT > 1:3927353/1‑91 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 2:3685284/91‑1 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 2:2177295/91‑1 TTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 1:1927455/91‑1 TTCATATTCATTTTTGTCCAAGTGGTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTA < 2:3685304/91‑1 CATATTCATTTTTGTCCATGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG > 2:3555877/1‑91 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGCTTGACGGTTTTCCAATTTTTTTCTTCATGCTCTTTTAAAAAATGGCTCTG > 2:22206/1‑91 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG > 2:1913726/1‑91 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 2:492877/91‑1 CATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATG < 1:582788/91‑1 TATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA > 1:2485157/1‑91 TATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA < 1:2405472/91‑1 TATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA > 1:2485093/1‑91 GTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAA < 2:3363513/91‑1 TTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAAT < 2:2655018/91‑1 AATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAG < 2:1438187/91‑1 ATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGC < 1:1568762/91‑1 TTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCC < 1:2009715/91‑1 TTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCC < 2:2331712/91‑1 ATTTGATTGACGGTTTTCCGATTTTTTACTTCATGCCCTGTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCAT < 2:3927927/91‑1 ATTTGATTGACGGTTTTCCAATTTTTTACTTCAGGCTCTTTTAAAAAATGGCTATGAAGAAATCGATGGGGATAGAATTTTTCATAGCCAT < 2:3927912/91‑1 ATTTGATTGACGGTTTTCCAATTTTCTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCAT < 1:3681739/91‑1 TTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATT < 2:749069/91‑1 CCAATTTATTACTGCATGCTCTATTAAAAAATGGCTATGAAGGAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGA < 2:2965137/91‑1 TTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGT > 2:2667305/1‑91 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCTTCAATCAAATAA > 1:490132/1‑91 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA > 2:970955/1‑91 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA < 2:1590861/91‑1 GGCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAA < 1:79834/91‑1 GCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAAT < 1:1089531/91‑1 GCTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAAT > 2:2600586/1‑91 GCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAAT > 1:1568744/1‑91 aTATGAAGAAATCTATGGGGATAGAATTTTTCAAAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 2:1140574/90‑1 CTATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATT < 1:664803/91‑1 TATGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTG < 1:3547627/91‑1 TGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAA > 1:2642656/1‑91 TGAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAA > 1:3845813/1‑91 GAAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAATTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAA < 1:418927/91‑1 AAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA < 2:1689991/91‑1 AAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA < 1:782287/91‑1 AAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA > 2:2946272/1‑91 AAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA < 1:782908/91‑1 AAGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAA > 2:1404117/1‑91 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAATCCGTCAATCAAATAATTGAAAAA < 1:1174406/91‑1 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA > 1:3065110/1‑91 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA < 2:1491021/91‑1 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA > 1:1657737/1‑91 AGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA > 2:2586729/1‑91 CCGCTTCATATTCATTTTTGTCCAAGTGTTCTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1928198‑1928296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctatgaaGAAATCTATGGGGATAGAATTTTTCATAGCCATTTTTTAAAAGAGCATGAAGTAAAAAATTGGAAAACCGTCAATCAAATAATTGAAAAA < USA300TCH1516_ALE/1928318‑1928229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |