BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1928296	216 (1.060)	12 (0.070)	9/140	NT	5.4%	intergenic (‑250/+51)	USA300HOU_RS09565/USA300HOU_RS09575	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1928318	228 (1.280)	12 (0.070)	9/140	NT	5.4%	intergenic (‑272/+29)	USA300HOU_RS09565/USA300HOU_RS09575	hypothetical protein/hypothetical protein

Only 100 of 302 total aligned reads displayed.

CTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAATTG  >  USA300TCH1516_ALE/1928228‑1928408

cTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATttc                                                                                            <  1:355788/91‑1 (MQ=255)

 tttttCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCt                                                                                           >  1:1657737‑M2/1‑90 (MQ=255)

 tttttCAATTATTTGATTGACGGATTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCt                                                                                           <  1:1174406‑M2/91‑2 (MQ=255)

  ttttCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCtt                                                                                          <  1:782287‑M2/91‑3 (MQ=255)

    ttCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttca                                                                                        >  1:3845813‑M2/1‑87 (MQ=255)

        attattTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatagc                                                                                    <  1:1089531‑M2/91‑9 (MQ=255)

        attattTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatagc                                                                                    >  2:2600586‑M2/1‑83 (MQ=255)

         ttattTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatagcc                                                                                   <  1:79834‑M2/91‑10 (MQ=255)

         ttattTGATTGAAGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCttcatagcc                                                                                   >  1:490132‑M2/1‑82 (MQ=255)

           attTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCaa                                                                                 <  1:3875107/91‑1 (MQ=255)

           attTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCaa                                                                                 <  2:703247/91‑1 (MQ=255)

            tttGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAAt                                                                                >  1:3618879/1‑91 (MQ=255)

              tgattgaCGTTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCCATGAAAAATTCTATCCCCAGAGATTTCTTCATAGCCAATGc                                                                              <  1:2862716/91‑1 (MQ=255)

              tgattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGc                                                                              <  1:2778738/91‑1 (MQ=255)

              tgattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGc                                                                              >  1:2728641/1‑91 (MQ=255)

               gattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCt                                                                             <  2:1420414/91‑1 (MQ=255)

               gattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCt                                                                             <  2:315692/91‑1 (MQ=255)

               gattgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAAGTCTATCCCCATAGATTTCTTCATAGCCAATGCt                                                                             >  1:3505806/1‑91 (MQ=255)

                attgaCGATTATCAAATTTTTTACTTCATACACTAAAAAAAAATAACTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTa                                                                            <  2:2581704/91‑1 (MQ=21)

                 ttgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTaa                                                                           <  2:2429160/91‑1 (MQ=255)

                  tgaCGGTTTTCCTATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAt                                                                          <  2:3292679/91‑1 (MQ=255)

                  tgaCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAt                                                                          <  2:3489301/91‑1 (MQ=255)

                    aCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAGAAATCTATGGGGATAGAATTTttcatagccattttttaaaa                                                                        >  2:2667305‑M2/1‑71 (MQ=255)

                    aCGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAttt                                                                        <  1:973228/91‑1 (MQ=255)

                    aCGGTTTTCCAATTTTTTACTTCAAAAAAAAAAAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAAttt                                                                        <  2:1254104/91‑1 (MQ=25)

                     cGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTg                                                                       >  1:521179/1‑91 (MQ=255)

                        ttttCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGttt                                                                    >  1:3079390/1‑91 (MQ=255)

                         tttCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTc                                                                   >  2:2055803/1‑91 (MQ=255)

                         tttCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTc                                                                   >  1:1819826/1‑91 (MQ=255)

                          ttCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCa                                                                  <  1:1844351/91‑1 (MQ=255)

                          ttCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCa                                                                  >  1:3099294/1‑91 (MQ=255)

                           tCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCAt                                                                 <  2:1122838/91‑1 (MQ=255)

                           tCCAATTTGTTACTTCATGCTCTTTGAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTGCTTCATAGCCAATGCTAATTTGTTTCAt                                                                 <  2:1574600/91‑1 (MQ=255)

                             cAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCACTGCTACTTTGTTTCATGt                                                               >  2:885746/1‑91 (MQ=255)

                               aTTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCa                                                             <  1:1617156/91‑1 (MQ=255)

                                ttttttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCAt                                                            <  2:2180841/91‑1 (MQ=255)

                                 tttttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCAtt                                                           <  1:3280556/91‑1 (MQ=255)

                                 tttttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCAtt                                                           >  2:1654464/1‑91 (MQ=255)

                                  ttttACTTAATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCAttt                                                          <  2:2946669/91‑1 (MQ=255)

                                   tttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTc                                                         <  1:1013086/91‑1 (MQ=255)

                                   tttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTc                                                         >  2:3574099/1‑91 (MQ=255)

                                   tttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTc                                                         >  1:1492059/1‑91 (MQ=255)

                                   tttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTc                                                         <  1:2656747/91‑1 (MQ=255)

                                    ttACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCt                                                        >  2:1169395/1‑91 (MQ=255)

                                     tACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCtt                                                       <  1:1438038/91‑1 (MQ=255)

                                     tACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCtt                                                       >  1:2628419/1‑91 (MQ=255)

                                     tACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCtt                                                       <  1:1947069/91‑1 (MQ=255)

                                       cTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTa                                                     >  1:3451802/1‑91 (MQ=255)

                                       cTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTa                                                     <  1:1268471/91‑1 (MQ=255)

                                       cTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTa                                                     >  1:1756953/1‑91 (MQ=255)

                                        ttCATGCTCTTTTAAAAAATGGCTATGAAAAATTATATCCCCATCGATTTCCTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTaa                                                    >  2:28914/1‑91 (MQ=255)

                                         tCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTaaa                                                   >  2:1757708/1‑91 (MQ=255)

                                         tCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTaaa                                                   >  2:2977242/1‑91 (MQ=255)

                                          cATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTaaaa                                                  >  1:989269/1‑91 (MQ=255)

                                           aTGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAAt                                                 >  2:1824149/1‑91 (MQ=255)

                                            tGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAAtt                                                <  1:2850199/91‑1 (MQ=255)

                                               tctTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCt                                             <  1:3754395/91‑1 (MQ=255)

                                                ctTTTAAAAAATGGCTATGAAAACTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTCACATTCCTa                                            >  2:2401171/1‑91 (MQ=255)

                                                 ttttAAAAAGTGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAGTTCCTaa                                           >  1:1968911/1‑91 (MQ=255)

                                                 ttttAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaa                                           >  1:2970948/1‑91 (MQ=255)

                                                  tttAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaaa                                          >  1:1580796/1‑91 (MQ=255)

                                                   ttAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaaaa                                         <  1:92517/91‑1 (MQ=255)

                                                    tAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTaaaaa                                        <  1:2832150/91‑1 (MQ=255)

                                                        aaaTGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATTTCATTTCTTTAAAATTCCTAAAAatata                                    >  2:251427/1‑91 (MQ=255)

                                                        aaaTGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAatata                                    >  1:1695945/1‑91 (MQ=255)

                                                         aaTGGCTATGAAAAATTCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaa                                   <  2:749069‑M2/91‑58 (MQ=255)

                                                          aTGGCTATGAAAAATTCTATCCCCATCGATTTCttcatagccattttttaaaagagcctgaagtaaaaaattggaaaaccgtcaatcaaat                                  <  2:3927912‑M2/91‑59 (MQ=255)

                                                          aTGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAAtatata                                  >  1:2427363/1‑91 (MQ=255)

                                                           tGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATaa                                 >  2:2795676/1‑91 (MQ=255)

                                                            ggCTATGAAAAATTCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaataa                                <  2:2331712‑M2/91‑61 (MQ=255)

                                                            ggCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATaaa                                <  2:1341214/91‑1 (MQ=255)

                                                              cTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACt                              <  2:2229755/91‑1 (MQ=255)

                                                                aTGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTaa                            <  2:3622542/91‑1 (MQ=255)

                                                                 tGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTaaa                           <  1:649016/91‑1 (MQ=255)

                                                                 tGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTaaa                           <  1:2437330/91‑1 (MQ=255)

                                                                   aaaaaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAg                         <  1:2067080/91‑1 (MQ=255)

                                                                   aaaaaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAACATATAAACTAAAAg                         <  1:2591664/91‑1 (MQ=255)

                                                                    aaaaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGc                        <  2:3536848/91‑1 (MQ=255)

                                                                      aaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCAt                      <  2:3097545/91‑1 (MQ=255)

                                                                      aaTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCAt                      <  2:2760164/91‑1 (MQ=255)

                                                                       aTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATa                     <  2:2746835/91‑1 (MQ=255)

                                                                       aTTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATa                     <  2:1496559/91‑1 (MQ=255)

                                                                        ttCTATCCCCATAGATTTCttcatagccattttttaaaagagcatgaagtaaaaaattggaaaaccgtcaatcaaataattgaaaaagaac                    <  2:3363513‑M2/91‑73 (MQ=255)

                                                                        ttCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATaa                    <  1:408717/91‑1 (MQ=255)

                                                                          cTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGt                  >  1:1883017/1‑91 (MQ=255)

                                                                            aTCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTaa                <  1:1411510/91‑1 (MQ=255)

                                                                            aTCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTaa                >  2:148370/1‑91 (MQ=255)

                                                                            aTCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTaa                >  2:45032/1‑91 (MQ=255)

                                                                             accccTTAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGaaaa               <  2:3647845/90‑2 (MQ=255)

                                                                                ccATAGATTTCTTCATAGCAAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAacaaa            <  2:3740521/91‑3 (MQ=255)

                                                                                 cATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAg           <  2:1992025/91‑1 (MQ=255)

                                                                                  aTAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGc          <  2:3558343/91‑1 (MQ=255)

                                                                                  aTAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGc          <  1:2347614/91‑1 (MQ=255)

                                                                                    aGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAGACTAAAAGCATAAGTAACACAGCaa        >  1:3687968/1‑91 (MQ=255)

                                                                                      aTTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCaaaa      <  2:2188639/91‑1 (MQ=255)

                                                                                        ttcttcATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAAt    >  1:656343/1‑91 (MQ=255)

                                                                                        ttcttcATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAAt    >  1:2949350/1‑91 (MQ=255)

                                                                                        ttcttcATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGAAAAAAt    <  2:2313117/91‑1 (MQ=255)

                                                                                          cttcATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAATATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAATTg  >  2:3259450/1‑91 (MQ=255)

                                                                                          cttcATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAATTg  <  1:2243780/91‑1 (MQ=255)

CTTTTTCAATTATTTGATTGACGGTTTTCCAATTTTTTACTTCATGCTCTTTTAAAAAATGGCTATGAAAAATTCTATCCCCATAGATTTCTTCATAGCCAATGCTAATTTGTTTCATGTCATTTCTTTAAAATTCCTAAAAATATATAAACTAAAAGCATAAGTAACACAGCAAAAATTG  >  USA300TCH1516_ALE/1928228‑1928408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.