| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1980867 = | 172 (0.840) | 16 (0.090) | 8/140 | NT | 9.4% | intergenic (‑109/+70) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1980913 = | 158 (0.890) | intergenic (‑155/+24) | USA300HOU_RS09865/USA300HOU_RS09870 | hypothetical protein/hypothetical protein | |||||
AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1980966‑1980867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA > USA300TCH1516_ALE/1980913‑1981002 AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC > 1:1318952/1‑91AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC < 2:1555013/91‑1AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGC < 1:632268/91‑1AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTATTTCGAGAGGTGAGGC > 2:3788500/1‑91 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATGCTTTTAATAAATAAGAAAAGCGATGTAACACACCGGTGTCGAGAGGTGAGGCA < 2:1924888/91‑1 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA < 1:2776083/91‑1 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA < 2:3420129/91‑1 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA > 2:2043812/1‑91 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA < 1:1037569/91‑1 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA < 1:1960979/91‑1 ATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCA < 1:1960917/91‑1 TGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCAT > 1:573305/1‑91 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC > 1:2169468/1‑91 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC > 1:2169459/1‑91 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 2:2066201/91‑1 GCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATC < 1:979935/91‑1 CTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCG < 1:824526/91‑1 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAGAGCGATGTAACACACCTGTTTCGAGAGGGGAGGCATCGC < 2:260896/91‑1 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC < 2:1650569/91‑1 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC > 2:1063350/1‑91 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC < 2:143916/91‑1 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC < 2:2573101/91‑1 TAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGCGAGGCATCGC > 2:3364702/1‑91 TAAAGAAGAATTAGTACATATCTAGACCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGC < 1:3692495/91‑1 AAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCT > 1:1548647/1‑91 AAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCT > 2:733896/1‑91 AAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCT > 1:883618/1‑91 AAGAAGAAGTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTT < 1:132494/91‑1 AGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTT > 2:2563216/1‑91 AGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTT > 2:1670127/1‑91 GAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT > 2:2876898/1‑91 AAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTA > 1:2904310/1‑91 AATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCACCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTC > 1:3431617/1‑91 TAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATCTAGGCCTAGATATGTACTAATTCTT > 2:4506/1‑91 AAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTC > 1:230383/1‑91 AAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCT > 1:3893791/1‑91 GCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTA > 2:2154320/1‑91 GCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTA > 2:2154332/1‑91 GCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTA > 2:2154609/1‑91 GCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTA > 2:1170519/1‑91 GCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTA > 2:1170402/1‑91 TGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAT > 2:2226300/1‑91 TGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAT > 2:1159482/1‑91 TGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAT > 2:753764/1‑91 TGTAACACACCTGTTTCGAGAGGTGAGGCATCGCATTTATCACTTGTTAAAAGTATATAGGCCTAGATACTTACTAATTCTTCTTTGGCAT > 2:753777/1‑91 AACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTC > 1:3032540/1‑91 AACACACCTGTTTCGAGAGGTGAGGCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTC > 2:3481214/1‑91 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC < 1:614845/91‑1 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC < 2:1140364/91‑1 ATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTC < 2:3535499/91‑1 CGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAT > 1:713673/1‑91 CGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAT > 1:3772170/1‑91 CGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAT > 1:3318901/1‑91 GCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATT > 1:3100668/1‑91 GCTTTTATTATTTATTAAAAGTATATAGGCCAAGATATGGACTGATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATT < 2:3196199/91‑1 CTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTT < 2:1892918/91‑1 CTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTT < 1:2568519/91‑1 CTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTT > 1:507474/1‑91 TTTTCTTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 1:3123770/1‑91 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 2:570594/1‑91 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 2:572734/1‑91 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 2:1311242/1‑91 TTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTT > 2:867907/1‑91 TTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTA > 1:499973/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAGTTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG > 2:3665218/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG > 1:3922829/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG > 2:3690788/1‑91 TTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAG > 2:2295661/1‑91 TATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGc > 2:2330862/1‑90 TATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA > 1:3765990/1‑91 AATGCTAAAGAAGAATTAGTACATATCTAGGCCTATATACTTTTAATAAATAATAAAAGCGATGTAACACACCTGTTTCGAGAGGTGAGGCATCGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1980966‑1980867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGA > USA300TCH1516_ALE/1980913‑1981002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |