New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1980867 =172 (0.840)16 (0.090) 8/140 NT 9.4% intergenic (‑109/+70) USA300HOU_RS09865/USA300HOU_RS09870 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 1980913 = 158 (0.890)intergenic (‑155/+24) USA300HOU_RS09865/USA300HOU_RS09870 hypothetical protein/hypothetical protein

Only 100 of 315 total aligned reads displayed.

ACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTC  >  USA300TCH1516_ALE/1980777‑1980957
                                                                                          |                                                                                          
gctaaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataata                                                                                            >  2:2330862‑M1/91‑91 (MQ=255)
acaacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAA                                                                                            <  1:270537‑M1/91‑1 (MQ=255)
acaacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAA                                                                                            >  1:1596576‑M1/1‑91 (MQ=255)
 caacaTAGTTATTCATTATACCACTGTTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAA                                                                                           <  1:3696153‑M1/91‑1 (MQ=255)
  aacaTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAA                                                                                          <  1:2990617‑M1/91‑1 (MQ=255)
   aaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataataaaa                                                                                         >  2:572734‑M1/88‑91 (MQ=255)
   aaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataataaaa                                                                                         >  2:1311242‑M1/88‑91 (MQ=255)
   aaaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataagaaaa                                                                                         >  1:3123770‑M1/88‑91 (MQ=255)
    aaatgagagaagctgaaacatactttaacagaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAg                                                                                        <  2:1892918‑M1/5‑1 (MQ=255)
     aTAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGC                                                                                       <  1:291560‑M1/91‑1 (MQ=255)
        gTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGAT                                                                                    >  2:1860717‑M1/1‑91 (MQ=255)
        gTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGAT                                                                                    <  1:852695‑M1/91‑1 (MQ=255)
        gTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGAT                                                                                    <  1:1025366‑M1/91‑1 (MQ=255)
        gTTATTCAATATACCACTATTTTTATTTTTTACTTCATTACTCCCTTCACTATCTGCTCAACCCATAATCAGCTTACAAACCACAAGcaac                                                                                    >  2:2820454/1‑88 (MQ=255)
           aTTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGcc                                                                                 >  2:3915027/1‑91 (MQ=255)
           aTTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGcc                                                                                 <  2:2154971/91‑1 (MQ=255)
             tCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTc                                                                               >  1:2034814/1‑91 (MQ=255)
             tCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTc                                                                               >  2:2396509/1‑91 (MQ=255)
              cATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTcc                                                                              >  1:3451089/1‑90 (MQ=255)
                ttATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCAcc                                                                            <  2:1371378/91‑1 (MQ=255)
                ttAGACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAATCGATGCCTCAcc                                                                            <  1:3059093/91‑1 (MQ=255)
                  ataCCACCATTTTTATTTTTTAAATCATTAATCATTTAACTTTCTGCTCAATTTATTATTAAATAAAAAACAAAAAGCGATGCCTCACctc                                                                          <  2:30576/91‑1 (MQ=255)
                    aCCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCtctc                                                                        >  2:1213590/1‑91 (MQ=255)
                      cACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGa                                                                      <  1:567465/91‑1 (MQ=255)
                       aCTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGaa                                                                     >  1:3957288/1‑91 (MQ=255)
                        cTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGaaa                                                                    >  2:2527820/1‑91 (MQ=255)
                        cTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGaaa                                                                    >  2:3711142/1‑91 (MQ=255)
                        cTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGaaa                                                                    <  2:105934/91‑1 (MQ=255)
                         tatttttattttTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAAc                                                                   <  1:3266170/91‑1 (MQ=255)
                         tatttttatgttTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAAc                                                                   <  1:3783768/91‑1 (MQ=255)
                           tttttctttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAg                                                                 <  2:3634880/91‑1 (MQ=255)
                               tatttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGgtgt                                                             >  2:2778350/1‑91 (MQ=255)
                                atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGgtgtg                                                            >  2:271378/1‑91 (MQ=255)
                                atttttTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGgtgtg                                                            >  2:2285340/1‑91 (MQ=255)
                                 ttttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGgtgtgt                                                           <  1:2083391/91‑1 (MQ=255)
                                  tttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGtt                                                          <  1:1574366/91‑1 (MQ=255)
                                  gaaatgctaaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGtt                                                          >  2:3481214‑M1/57‑91 (MQ=255)
                                   ttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGtaacacacctgtttcgagaggtgagg                                                         <  1:3186528‑M1/91‑27 (MQ=255)
                                   ttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTa                                                         <  2:1500280/91‑1 (MQ=255)
                                   ttttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTa                                                         <  1:2380633/91‑1 (MQ=255)
                                    tttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGtaacacacctgtttcgagaggtgaggc                                                        <  1:246777‑M1/91‑28 (MQ=255)
                                     ttAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGtaacacacctgtttcgagaggtgaggca                                                       <  2:882696‑M1/91‑29 (MQ=255)
                                     atgccaaagaagaattagtaagtatctaggcctatatacttttaacaagtgatAAATGCGATGCCTCACCTCTCGAAACAGGTGTGTTACa                                                       >  2:753777‑M1/54‑91 (MQ=255)
                                      tAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGtaacacacctgtttcgagaggtgaggcat                                                      <  1:492328‑M1/91‑30 (MQ=255)
                                      tAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcat                                                      >  1:1702780‑M2/1‑88 (MQ=255)
                                       aaTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGtaacacacctgtttcgagaggtgaggcatc                                                     <  1:2806692‑M1/91‑31 (MQ=255)
                                       aaTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGtaacacacctgtttcgagaggtgaggcatc                                                     <  1:373157‑M1/91‑31 (MQ=255)
                                       aaTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatc                                                     <  2:1908009‑M2/91‑5 (MQ=255)
                                        aTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGtaacacacctgtttcgagaggtgaggcatcg                                                    <  1:2769218‑M1/91‑32 (MQ=255)
                                        aTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGtaacacacctgtttcgagaggtgaggcatcg                                                    <  1:2210797‑M1/91‑32 (MQ=255)
                                        aTTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcg                                                    >  2:15607‑M2/1‑86 (MQ=255)
                                         ttCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAATAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgc                                                   >  2:2945505‑M2/1‑85 (MQ=255)
                                         ttCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgc                                                   >  2:3684828‑M2/1‑85 (MQ=255)
                                         taaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGc                                                   >  2:2154320‑M1/50‑91 (MQ=255)
                                         taaagaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGc                                                   >  2:1170402‑M1/50‑91 (MQ=255)
                                          tCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgct                                                  <  1:512472‑M2/91‑8 (MQ=255)
                                          tCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgct                                                  >  1:1775179‑M2/1‑84 (MQ=255)
                                          tCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgct                                                  >  2:660574‑M2/1‑84 (MQ=255)
                                           cATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTAcatcgctt                                                 <  1:2310658‑M2/91‑9 (MQ=255)
                                            agaagaattagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCttt                                                >  1:3893791‑M1/47‑91 (MQ=255)
                                              aagaattagtacatatctaggcctagatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTttta                                              >  2:4506‑M1/45‑91 (MQ=255)
                                                aTCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatt                                            <  1:3590245/91‑1 (MQ=255)
                                                 tCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatta                                           <  2:3151021/91‑1 (MQ=255)
                                                 tCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatta                                           <  2:2058567/91‑1 (MQ=255)
                                                    tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt                                        <  1:629604/91‑1 (MQ=255)
                                                    tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt                                        <  1:3910154/91‑1 (MQ=255)
                                                      tCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGTAACATGTGTGTTACATCGCTtttcttatatct                                      >  2:3311522/1‑87 (MQ=255)
                                                      tCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttat                                      >  1:2760190/1‑91 (MQ=255)
                                                        aCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatta                                    >  1:3771103/1‑91 (MQ=255)
                                                         cTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAATAGGTGTGTTACATCGCTTTTATTATTTATTaa                                   >  1:994019/1‑91 (MQ=255)
                                                         cTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaa                                   >  1:1119933/1‑91 (MQ=255)
                                                         cTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaa                                   <  1:70428/91‑1 (MQ=255)
                                                          tttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaa                                  <  1:254683/91‑1 (MQ=255)
                                                           ttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaaa                                 <  1:3703195/91‑1 (MQ=255)
                                                            tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg                                <  2:321624/91‑1 (MQ=255)
                                                             cTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGt                               >  2:2106214/1‑91 (MQ=255)
                                                                  cAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                          <  2:1689708/91‑1 (MQ=255)
                                                                  cAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                          >  2:2787387/1‑91 (MQ=255)
                                                                  cAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                          <  2:3166742/91‑1 (MQ=255)
                                                                   aaTTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAg                         >  1:2590997/1‑91 (MQ=255)
                                                                   aaTTTATTACTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAg                         >  1:1970580/1‑91 (MQ=255)
                                                                        attattaGTTTACATACAAAAAGCGATGCCTCGCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAGAAGTATATAGGCCTa                    <  1:3374746/91‑1 (MQ=255)
                                                                        attattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTa                    <  2:1137483/91‑1 (MQ=255)
                                                                         ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg                   >  2:86009/1‑91 (MQ=255)
                                                                         ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg                   >  1:144437/1‑91 (MQ=255)
                                                                            ttaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGata                >  1:2881533/1‑91 (MQ=255)
                                                                            ttaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTCTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGata                >  2:3548806/1‑91 (MQ=255)
                                                                              aGTTTACATACCAAAAGCGATGCCTCACCTCTCGACACAGGTGTGCTACATCGCTATTATTCTTTATTAAAAGTATATAGGCCTAGATATg              >  2:1733941/1‑91 (MQ=255)
                                                                               gTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGt             >  2:3379305/1‑91 (MQ=255)
                                                                               gTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGt             >  2:399248/1‑91 (MQ=255)
                                                                               gTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGt             >  2:3808814/1‑91 (MQ=255)
                                                                                tttACATACAACACGCGATGCCTCAGCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa            <  2:1630401/91‑1 (MQ=255)
                                                                                tttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa            >  1:1670020/1‑91 (MQ=255)
                                                                                  tacatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt          <  1:1270794/91‑1 (MQ=255)
                                                                                  tacatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt          >  1:934123/1‑91 (MQ=255)
                                                                                   acatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTa         >  2:1397866/1‑91 (MQ=255)
                                                                                      tacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAtt      <  1:1196789/91‑1 (MQ=255)
                                                                                       acaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttc     <  2:688594/91‑1 (MQ=255)
                                                                                        caAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttct    >  1:3330309/1‑91 (MQ=255)
                                                                                          aaaaGCGATGtaacacacctgtttcgagaggtgaggcatcgctttttgtatgtaaactaataataaattgagcagaaagtgaaatgattaa  >  2:1957018‑M1/1‑10 (MQ=255)
                                                                                          |                                                                                          
ACAACATAGTTATTCATTATACCACTATTTTTATTTTTTAATTCATTAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTC  >  USA300TCH1516_ALE/1980777‑1980957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.