BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1980867 =	172 (0.840)	16 (0.090)	8/140	NT	9.4%	intergenic (‑109/+70)	USA300HOU_RS09865/USA300HOU_RS09870	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1980913 =	158 (0.890)	16 (0.090)	8/140	NT	9.4%	intergenic (‑155/+24)	USA300HOU_RS09865/USA300HOU_RS09870	hypothetical protein/hypothetical protein

Only 100 of 252 total aligned reads displayed.

TAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAA  >  USA300TCH1516_ALE/1980823‑1981003

tAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTttta                                                                                            >  1:984166/1‑91 (MQ=255)

aagaattagtacatatctaggcctagatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTttta                                                                                            >  2:4506‑M1/45‑91 (MQ=255)

  gaattagtacatatctaggcctatatacttttaataaataatAAAAGCGGTGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttatt                                                                                          >  1:3431617‑M1/43‑91 (MQ=255)

    cATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattat                                                                                        <  1:3599315/91‑1 (MQ=255)

     aTTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatt                                                                                       >  2:1242130/1‑91 (MQ=255)

      tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt                                                                                      >  1:3021642/1‑91 (MQ=255)

      tttCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt                                                                                      <  1:629604/91‑1 (MQ=255)

      tagtacatatctaggcctatatacttttaataaataatAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattattt                                                                                      >  1:2904310‑M1/39‑91 (MQ=255)

        tCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttat                                                                                    >  1:2760190/1‑91 (MQ=255)

          aCTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTtttattatttatta                                                                                  >  2:2783217/1‑91 (MQ=255)

           cTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAATAGGTGTGTTACATCGCTTTTATTATTTATTaa                                                                                 >  1:994019/1‑91 (MQ=255)

             ttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaaa                                                                               <  1:3702979/91‑1 (MQ=255)

             ttCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTaaaa                                                                               <  1:3703195/91‑1 (MQ=255)

              tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg                                                                              <  1:2042092/91‑1 (MQ=255)

              tCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAg                                                                              <  1:85706/91‑1 (MQ=255)

                tGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGta                                                                            <  2:65721/91‑1 (MQ=255)

                tGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGta                                                                            <  2:669449/91‑1 (MQ=255)

                 gCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtat                                                                           >  1:2808847/1‑91 (MQ=255)

                   tCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatat                                                                         <  1:2141171/91‑1 (MQ=255)

                    cAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGtatata                                                                        <  2:3166742/91‑1 (MQ=255)

                     aaTTTATTACTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAg                                                                       >  1:1970580/1‑91 (MQ=255)

                     aaTGTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAg                                                                       <  1:1695504/91‑1 (MQ=255)

                      aTTTA‑TATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGc                                                                     <  2:880961/91‑1 (MQ=255)

                       tttATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGc                                                                     <  1:3532469/91‑1 (MQ=255)

                         tattattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCt                                                                   <  1:1628014/91‑1 (MQ=255)

                           ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg                                                                 >  2:960246/1‑91 (MQ=255)

                           ttattaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAg                                                                 >  2:86009/1‑91 (MQ=255)

                              ttaGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGata                                                              <  2:1551321/91‑1 (MQ=255)

                               taGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGatat                                                             >  2:1697839/1‑91 (MQ=255)

                                aGTTTACATACCAAAAGCGATGCCTCACCTCTCGACACAGGTGTGCTACATCGCTATTATTCTTTATTAAAAGTATATAGGCCTAGATATg                                                            >  2:1733941/1‑91 (MQ=255)

                                 gTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGt                                                           <  1:2371184/91‑1 (MQ=255)

                                 gTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGt                                                           >  2:3808814/1‑91 (MQ=255)

                                  tttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa                                                          >  2:3930961/1‑91 (MQ=255)

                                  tttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTACTATTTATTAAAAGTATATAGGCCTAAATATGTa                                                          >  2:3518825/1‑91 (MQ=255)

                                  tttACATACAAAAAGCGATGCCACACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTa                                                          <  2:276665/91‑1 (MQ=255)

                                   ttACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTAc                                                         <  2:3307181/91‑1 (MQ=255)

                                    tacatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                        <  1:1270794/91‑1 (MQ=255)

                                    tacatacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACt                                                        <  1:3712734/91‑1 (MQ=255)

                                       atacaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAt                                                     >  2:3125736/1‑91 (MQ=255)

                                         acaAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttc                                                   >  1:3355845/1‑91 (MQ=255)

                                            aaaagcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAAttcttc                                                >  1:230383‑M2/47‑91 (MQ=255)

                                             AAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATtcttct                                               >  2:1670127‑M1/1‑91 (MQ=255)

                                              AAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTActtcttctt                                              <  1:132494‑M1/91‑1 (MQ=255)

                                               AGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCttt                                             >  1:1548647‑M1/1‑91 (MQ=255)

                                               AGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCttt                                             >  1:883618‑M1/1‑91 (MQ=255)

                                                gcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa                                            >  2:2154609‑M2/43‑91 (MQ=255)

                                                gcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa                                            >  2:2154320‑M2/43‑91 (MQ=255)

                                                gcgatgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa                                            >  2:1170402‑M2/43‑91 (MQ=255)

                                                GCGATGCCTCCCCTCTCGAAACAGGTGTGTTACATCGCTCTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa                                            <  2:260896‑M1/91‑1 (MQ=255)

                                                GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa                                            <  2:1650569‑M1/91‑1 (MQ=255)

                                                GCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTa                                            <  2:2573101‑M1/91‑1 (MQ=255)

                                                  GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc                                          <  2:2066201‑M1/91‑1 (MQ=255)

                                                  GATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGc                                          >  1:2169468‑M1/1‑91 (MQ=255)

                                                   ATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCa                                         >  1:573305‑M1/1‑91 (MQ=255)

                                                    tgtaacacacctgtttcgagaggtgaggcatcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt                                        >  2:753764‑M2/39‑91 (MQ=255)

                                                    TGCCTCACCTCTCGACACCGGTGTGTTACATCGCTTTTCTTATTTATTAAAAGCATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt                                        <  2:1924888‑M1/91‑1 (MQ=255)

                                                    TGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt                                        >  2:2043812‑M1/1‑91 (MQ=255)

                                                    TGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt                                        <  1:1037569‑M1/91‑1 (MQ=255)

                                                    TGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAt                                        <  2:3420129‑M1/91‑1 (MQ=255)

                                                      ccTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCAttt                                      >  2:1995218/1‑91 (MQ=255)

                                                        tCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCt                                    <  1:429881/91‑1 (MQ=255)

                                                          aCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGt                                  >  1:3817865/1‑91 (MQ=255)

                                                          aCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGt                                  >  2:3067518/1‑91 (MQ=255)

                                                          aCCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGt                                  >  1:1128815/1‑91 (MQ=255)

                                                            ctctCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTa                                >  2:1804368/1‑91 (MQ=255)

                                                             tctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaa                               <  2:2299678/91‑1 (MQ=255)

                                                              ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa                              >  1:3381664/1‑91 (MQ=255)

                                                              ctcGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTaaa                              <  1:1790039/91‑1 (MQ=255)

                                                                cGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGt                            >  1:3213585/1‑91 (MQ=255)

                                                                 gAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTa                           <  2:1069659/91‑1 (MQ=255)

                                                                  aaaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTAt                          >  1:1879390/1‑91 (MQ=255)

                                                                   aaCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATg                         <  1:1907688/91‑1 (MQ=255)

                                                                    aCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGt                        <  1:1740349/91‑1 (MQ=255)

                                                                    aCAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGt                        <  2:141537/91‑1 (MQ=255)

                                                                     cAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGtt                       <  1:706254/91‑1 (MQ=255)

                                                                     cAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGtt                       >  2:2410847/1‑91 (MQ=255)

                                                                     cAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGtt                       >  2:88358/1‑91 (MQ=255)

                                                                      aGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGttt                      >  2:884985/1‑91 (MQ=255)

                                                                       ggTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTc                     <  1:670991/91‑1 (MQ=255)

                                                                        gtgtgtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCa                    <  2:767391/91‑1 (MQ=255)

                                                                            gtTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCtc                >  2:3317501/1‑90 (MQ=255)

                                                                             ttACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtc               <  2:1269965/91‑1 (MQ=255)

                                                                               aCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctc             <  1:2633125/91‑1 (MQ=255)

                                                                               aCATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctc             <  1:2500196/91‑1 (MQ=255)

                                                                                 atcgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTtctctc           <  2:1140364‑M2/82‑1 (MQ=255)

                                                                                   cgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAt         >  1:3772170‑M2/8‑91 (MQ=255)

                                                                                   cgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAt         >  1:3318901‑M2/8‑91 (MQ=255)

                                                                                   cgcttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAt         >  1:713673‑M2/8‑91 (MQ=255)

                                                                                    gcttttATTATTTATTAAAAGTATATAGGCCAAGATATGGACTGATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAtt        <  2:3196199‑M2/85‑1 (MQ=255)

                                                                                     cttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAttt       <  1:2568519‑M2/86‑1 (MQ=255)

                                                                                     cttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAttt       >  1:507474‑M2/6‑91 (MQ=255)

                                                                                     cttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAttt       <  2:1892918‑M2/86‑1 (MQ=255)

                                                                                      ttttCTTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAtttt      >  1:3123770‑M2/5‑91 (MQ=255)

                                                                                      ttttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCAtttt      >  2:570594‑M2/5‑91 (MQ=255)

                                                                                        ttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAGTTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg    >  2:3665218‑M2/3‑91 (MQ=255)

                                                                                        ttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg    >  2:3690788‑M2/3‑91 (MQ=255)

                                                                                        ttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg    >  1:3922829‑M2/3‑91 (MQ=255)

                                                                                        ttATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAg    >  2:2295661‑M2/3‑91 (MQ=255)

                                                                                         tATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGa   >  1:3765990‑M2/2‑91 (MQ=255)

                                                                                          attatttattaAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGaa  >  1:1472471/1‑91 (MQ=255)

TAATCATTTCACTTTCTGCTCAATTTATTATTAGTTTACATACAAAAAGCGATGCCTCACCTCTCGAAACAGGTGTGTTACATCGCTTTTATTATTTATTAAAAGTATATAGGCCTAGATATGTACTAATTCTTCTTTAGCATTTCTGTTAAAGTATGTTTCAGCTTCTCTCATTTTAGAA  >  USA300TCH1516_ALE/1980823‑1981003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.