| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1990341 = | 192 (0.940) | 13 (0.080) | 7/124 | NT | 9.5% | intergenic (‑90/+61) | queG/tcyC_1 | Epoxyqueuosine reductase/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | 1990392 = | 98 (0.620) | intergenic (‑141/+10) | queG/tcyC_1 | Epoxyqueuosine reductase/L‑cystine import ATP‑binding protein TcyC | |||||
CCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1990446‑1990341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcatatattcaagcttCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTCT > USA300TCH1516_ALE/1990392‑1990480 CCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATAT > 1:1266075/1‑91CCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATAT > 1:1732972/1‑91 CGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATC > 1:1287398/1‑91 CGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATC > 1:331117/1‑91 GCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCA < 2:1326659/91‑1 GCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCA > 2:3088327/1‑91 GCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCA > 2:3087411/1‑91 GCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCA < 1:565787/91‑1 GCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCA < 1:1599459/91‑1 CAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCAT < 1:399733/91‑1 AACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATA > 2:977910/1‑91 AACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATA > 1:3197396/1‑91 AACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATA > 2:2014337/1‑91 AACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATA > 1:1711523/1‑91 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT < 2:2739916/91‑1 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT > 2:2135132/1‑91 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT > 2:2135015/1‑91 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT < 2:1653750/91‑1 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT > 1:7148/1‑91 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT > 1:7135/1‑91 ATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCAAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATAT > 2:3045775/1‑91 GAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTC > 2:2894228/1‑91 GAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTC > 2:222242/1‑91 AAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCA < 2:3415770/91‑1 AAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCA < 2:3416003/91‑1 AAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCA < 2:1595974/91‑1 AGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAG > 1:1747642/1‑91 AGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAG < 1:3740149/91‑1 GAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGC < 1:1650045/91‑1 GAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGC < 2:3841066/91‑1 AACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGCT < 2:1439779/91‑1 AACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGCT > 2:851881/1‑91 AATATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCA > 1:3722298/1‑91 ATATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCAT > 2:2221741/1‑91 TATATGATACGCACCACAAAGTTATATCATATATTCCAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCAcg > 2:877849/1‑89 TATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATG > 1:299264/1‑91 TATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATG > 2:2776190/1‑91 TATATGATACGCACCACAAAGTTATATCATATATTCAAGCATCGTTACGTTGTTATAATACTCTTGTCAAGAAATTTTGTGTTCTTTCATG > 2:3675971/1‑91 ATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGT > 1:308454/1‑91 ATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGT > 1:2142505/1‑91 ATATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGT > 1:561055/1‑91 TATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTT > 1:993895/1‑91 ATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTG > 1:2356935/1‑91 ATGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTG > 2:975938/1‑91 TGATACGCACCACAAAGTTATATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGC > 2:2061067/1‑91 TATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGAC < 2:1858917/91‑1 ATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACT < 2:3526958/91‑1 ATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACT < 1:1547295/91‑1 ATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACT < 2:3205783/91‑1 ATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACT > 2:1147410/1‑91 ATCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATAGTTCGACT > 2:3517880/1‑91 TCATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTG < 1:1727552/91‑1 CATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGG < 1:1600649/91‑1 CATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGG < 1:1600772/91‑1 CATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGG < 2:1475904/91‑1 CATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGG < 1:1600673/91‑1 ATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGT < 1:2869682/91‑1 ATATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGT < 1:2869805/91‑1 TATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTG > 1:863516/1‑91 ATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGT < 2:1545357/91‑1 ATATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGT > 2:3349593/1‑91 TATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTG > 1:2838310/1‑91 TATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTG > 2:959675/1‑91 ATTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGC < 1:2807516/91‑1 gTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTGCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGCGCC < 2:3498973/90‑1 TTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCC < 2:2875816/91‑1 TTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCC > 1:901853/1‑91 TTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCC < 2:1607621/91‑1 TTCAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCC < 2:167895/91‑1 CAAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTG < 1:3862308/91‑1 AAGCTTCGTTAGGTTGTTATATTACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGA < 2:3415846/91‑1 AAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGA < 1:2794526/91‑1 AAGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGA > 2:3949957/1‑91 AGCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGAC > 1:1365945/1‑91 GCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACT < 1:3709511/91‑1 GCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACT > 2:2359286/1‑91 GCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACT < 1:3709490/91‑1 GCTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACT > 1:383552/1‑91 CTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTC > 2:1978844/1‑91 CTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTC > 2:816780/1‑91 CTTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTC < 1:1651292/91‑1 TTCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTCT < 1:86798/91‑1 CCGCAACATGAAAGAACACAAAATTTCTTAGCAAGAGTATTATAACAACCTAACGAAGCTTGAATATATGATACGCACCACAAAGTTATATCATATATTCAAGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1990446‑1990341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatcatatattcaagcttCGTTAGGTTGTTATAATACTCTTGCTAAGAAATTTTGTGTTCTTTCATGTTGCGGTTGTTCAAATATTTCGACTGGTGTGCCTGACTCT > USA300TCH1516_ALE/1990392‑1990480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |