| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2008942 = | 157 (0.770) | 16 (0.100) | 7/132 | NT | 10.5% | intergenic (+70/+121) | USA300HOU_RS10115/USA300HOU_RS10125 | hypothetical protein/Putative multidrug export ATP‑binding/permease protein |
| ? | USA300TCH1516_ALE | 2008991 = | 145 (0.870) | intergenic (+119/+72) | USA300HOU_RS10115/USA300HOU_RS10125 | hypothetical protein/Putative multidrug export ATP‑binding/permease protein | |||||
TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2009045‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC > USA300TCH1516_ALE/2008991‑2009079 TTCAGTACGATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT < 2:3225112/91‑1TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT > 2:948002/1‑91TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT > 1:3273895/1‑91TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT > 1:3273441/1‑91TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAAT > 2:487845/1‑91 TCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATC > 2:1769452/1‑91 TCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATGTTCTTAATTGAAAATAATC < 2:3461027/91‑1 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT > 1:380148/1‑91 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT > 1:380295/1‑91 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT < 1:2328467/91‑1 CAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCT > 1:1159815/1‑91 AGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTT < 1:2739862/91‑1 AGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTT > 2:166974/1‑91 AGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTT < 2:1373116/91‑1 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTA < 2:3452882/91‑1 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTA < 1:1991456/91‑1 GTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGACTTTCTTAATTGAAAATAATCTTA > 2:2891417/1‑91 TACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTAC < 1:193471/91‑1 TACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTAC < 2:2715393/91‑1 ACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT > 2:738841/1‑91 ACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACT > 2:242204/1‑91 CAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTG < 2:2723944/91‑1 CAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTG < 1:2570878/91‑1 CAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTG < 1:1296453/91‑1 CAATCTTGAAGAGAAAATTTGTAACAGGAAGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGACAATCATCTTCCTG > 2:64680/1‑91 AATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGC < 2:301905/91‑1 AATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGC > 2:591411/1‑91 AATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGC < 2:301835/91‑1 ATCTTGAAGCGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT > 1:3344019/1‑91 ATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT < 2:1730394/91‑1 ATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT < 1:1088633/91‑1 ATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT > 1:2300560/1‑91 ATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCT > 1:1651396/1‑91 TCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT < 2:1240923/91‑1 TCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT > 2:3850323/1‑91 TCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT > 2:3850252/1‑91 TCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT < 2:3128281/91‑1 TCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTT < 1:2680081/91‑1 TTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTT > 1:1868665/1‑91 AAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAG > 1:1467708/1‑91 AAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAG > 1:1467709/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 1:317685/1‑91 GCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATT > 2:2212139/1‑91 CAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTG > 1:3541095/1‑91 CAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTG > 1:3541643/1‑91 CAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTG > 2:2573665/1‑91 AGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGT > 1:2799134/1‑91 GTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTA > 1:1472098/1‑91 GTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTA > 2:1055557/1‑91 GTAAGAGAATTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACACCACAATCCTGTTACAAATTTTCTCTTCAAGATCGTA > 2:2128818/1‑91 AGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTG > 2:2650040/1‑91 AGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTG > 2:2650210/1‑91 AGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTG > 1:1102702/1‑91 AGATTTTCTTACTTGAAAATAATCTTACTGCTTTTTCTATGTTATGCCCGCACCATCCTGTTACAAATTTTCTCTTCAAGCTCCTACTGAA > 2:598590/1‑91 AGATTTTCTTAATTGAAAACAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAA > 2:598539/1‑91 CTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAA > 1:1855809/1‑91 CTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAA < 1:2641702/91‑1 CTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAA > 1:3828675/1‑91 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG > 2:2760273/1‑91 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG > 2:742973/1‑91 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG < 1:773744/91‑1 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG > 1:308021/1‑91 TTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAG > 2:3739047/1‑91 TACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGT > 1:3110701/1‑91 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT > 2:2095179/1‑91 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT < 2:1159583/91‑1 ACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTT < 2:43012/91‑1 CTGCTTTTTCTATGTTATTACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT > 2:710358/1‑91 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT > 1:1064625/1‑91 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 2:1348254/91‑1 CTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTT < 2:1348255/91‑1 GCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTG < 2:1862006/91‑1 TTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAAT < 2:1196671/91‑1 TTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATG > 1:1243021/1‑91 TTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATG < 1:2675469/91‑1 TTCTATGTTATGACCCCACCATCCTGTTACAATTTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC < 2:557878/91‑1 TTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC < 1:160558/91‑1 TTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC < 1:160686/91‑1 TTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGACTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC < 2:2271375/91‑1 TTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGAGATTTTCTTAATTGAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2009045‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGC > USA300TCH1516_ALE/2008991‑2009079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |