BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2008942 =	157 (0.770)	16 (0.100)	7/132	NT	10.5%	intergenic (+70/+121)	USA300HOU_RS10115/USA300HOU_RS10125	hypothetical protein/Putative multidrug export ATP‑binding/permease protein
*	?	USA300TCH1516_ALE	2008991 =	145 (0.870)	16 (0.100)	7/132	NT	10.5%	intergenic (+119/+72)	USA300HOU_RS10115/USA300HOU_RS10125	hypothetical protein/Putative multidrug export ATP‑binding/permease protein

Only 100 of 267 total aligned reads displayed.

ACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTA  >  USA300TCH1516_ALE/2008901‑2009081

acaATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTc                                                                                            <  1:1260221/91‑1 (MQ=255)

acaATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTc                                                                                            <  2:133056/91‑1 (MQ=255)

  aaTGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTa                                                                                          <  2:3554019/91‑1 (MQ=255)

  aaTGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTa                                                                                          <  1:3893551/91‑1 (MQ=255)

   aTGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTAt                                                                                         >  2:3571010/1‑91 (MQ=255)

   aTGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTAt                                                                                         >  1:982329/1‑91 (MQ=255)

    tGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATg                                                                                        >  1:633798/1‑91 (MQ=255)

    tGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATg                                                                                        >  2:1388441/1‑91 (MQ=255)

     gagaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGt                                                                                       <  2:1432915/91‑1 (MQ=255)

       gaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTa                                                                                     >  2:670751/1‑91 (MQ=255)

       gaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTa                                                                                     <  2:3364921/91‑1 (MQ=255)

       gaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTa                                                                                     >  2:2908499/1‑91 (MQ=255)

        aTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTAt                                                                                    <  1:3654150/91‑1 (MQ=255)

          aaaCTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGa                                                                                  <  2:2021301/91‑1 (MQ=255)

           aaCTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGAc                                                                                 >  2:3743743/1‑91 (MQ=255)

             cTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGAccc                                                                               >  1:2139815/1‑91 (MQ=255)

             cTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGAccc                                                                               <  2:1539562/91‑1 (MQ=255)

               aaTATTGAATCTCGAAAGTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCcca                                                                             <  2:1104334/91‑1 (MQ=255)

                 tatTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCccacc                                                                           <  2:3137265/91‑1 (MQ=255)

                 tatTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCccacc                                                                           <  2:334330/91‑1 (MQ=255)

                  atTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCccacca                                                                          >  1:3126451/1‑91 (MQ=255)

                    tGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATc                                                                        <  2:860606/91‑1 (MQ=255)

                      aaTCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCt                                                                      <  1:915373/91‑1 (MQ=255)

                       aTCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTg                                                                     >  1:3197293/1‑91 (MQ=255)

                         ctcGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGtt                                                                   <  1:2825620/91‑1 (MQ=255)

                          tcGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTa                                                                  <  1:763631/91‑1 (MQ=255)

                           cGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTAc                                                                 >  2:2000214/1‑91 (MQ=255)

                           cGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTAc                                                                 >  1:3812748/1‑91 (MQ=255)

                            gAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAGTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACa                                                                <  2:1748265/91‑1 (MQ=255)

                            gAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCAACATCCTGTTACa                                                                >  1:1233223/1‑91 (MQ=255)

                             aaattaaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACaa                                                               <  2:3932724/91‑1 (MQ=255)

                                 taaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAAttt                                                           <  2:3769491/91‑1 (MQ=255)

                                  aaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAAtttt                                                          <  1:1366655/91‑1 (MQ=255)

                                  aaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAAtttt                                                          >  1:41529/1‑91 (MQ=255)

                                  aaattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAAtttt                                                          >  2:273566/1‑91 (MQ=255)

                                   aattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtc                                                         >  1:1617458/1‑91 (MQ=255)

                                   aattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtc                                                         <  1:989608/91‑1 (MQ=255)

                                   aattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtc                                                         >  2:3280611/1‑91 (MQ=255)

                                   aattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtc                                                         >  1:2750025/1‑91 (MQ=255)

                                   aattTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtc                                                         <  1:1530073/91‑1 (MQ=255)

                                    attTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACACCACCATCCTGTTACAAATTTcct                                                        >  2:3686377/1‑91 (MQ=255)

                                     tttAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtctc                                                       >  1:183391/1‑91 (MQ=255)

                                     tttAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtctc                                                       <  1:2098637/91‑1 (MQ=255)

                                     tttAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACACCACCATCCTGTTACAAATTTtctc                                                       >  1:3697078/1‑91 (MQ=255)

                                      ttAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTctct                                                      >  1:2005269/1‑91 (MQ=255)

                                        aaaaaaGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTc                                                    <  1:1847865/91‑1 (MQ=255)

                                            AAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGa                                                <  2:1240923‑M1/91‑1 (MQ=255)

                                            AAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGa                                                >  2:3850323‑M1/1‑91 (MQ=255)

                                            AAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGa                                                <  1:2680081‑M1/91‑1 (MQ=255)

                                             AGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAt                                               >  1:1651396‑M1/1‑91 (MQ=255)

                                             AGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAt                                               >  1:2300560‑M1/1‑91 (MQ=255)

                                             AGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAt                                               <  1:1088633‑M1/91‑1 (MQ=255)

                                             AGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCGCTTCAAGAt                                               >  1:3344019‑M1/1‑91 (MQ=255)

                                              gcagtaagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAtt                                              >  1:317685‑M2/45‑91 (MQ=255)

                                              gcagtaagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAtt                                              >  2:2212139‑M2/45‑91 (MQ=255)

                                              GCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAtt                                              <  2:301835‑M1/91‑1 (MQ=255)

                                               cagtaagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTg                                             >  1:3541095‑M2/44‑91 (MQ=255)

                                               cagtaagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTg                                             >  2:2573665‑M2/44‑91 (MQ=255)

                                               CAGGAAGATGATTGTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCTTCCTGTTACAAATTTTCTCTTCAAGATTg                                             >  2:64680‑M1/1‑91 (MQ=255)

                                                AGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGt                                            >  2:242204‑M1/1‑91 (MQ=255)

                                                 gtaagagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTa                                           >  1:1472098‑M2/42‑91 (MQ=255)

                                                 GTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTa                                           <  1:193471‑M1/91‑1 (MQ=255)

                                                 GTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTa                                           <  2:2715393‑M1/91‑1 (MQ=255)

                                                    agagattttcttaattgaaaataatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTg                                        >  2:2650040‑M2/39‑91 (MQ=255)

                                                    AGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTg                                        >  1:1159815‑M1/1‑91 (MQ=255)

                                                     GATTATTTTCAATTAAGAACATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGa                                       <  2:3461027‑M1/91‑1 (MQ=255)

                                                     GATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGa                                       >  2:1769452‑M1/1‑91 (MQ=255)

                                                      agattttcttaattgaaaacaatcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGaa                                      >  2:598539‑M2/37‑91 (MQ=255)

                                                       ttattTTCAATTAAGATAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAg                                     <  2:3036990/91‑1 (MQ=255)

                                                       ttattTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAg                                     <  1:2535218/91‑1 (MQ=255)

                                                        tattTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGt                                    >  1:817613/1‑91 (MQ=255)

                                                          ttttCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCa                                  >  2:2299610/1‑91 (MQ=255)

                                                           tttCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCaa                                 <  1:3086/91‑1 (MQ=255)

                                                           tttCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCaa                                 <  1:3273/91‑1 (MQ=255)

                                                           tttCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCaa                                 >  1:1316063/1‑91 (MQ=255)

                                                            ttCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCaaa                                <  1:3748364/91‑1 (MQ=255)

                                                            ttCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCaaa                                <  1:1418556/91‑1 (MQ=255)

                                                            ttCAAGTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCaaa                                <  2:3205978/91‑1 (MQ=255)

                                                             tCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAaac                               <  1:1041216/91‑1 (MQ=255)

                                                             tCAAGTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAaac                               <  2:3812526/91‑1 (MQ=255)

                                                                aTTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAaacaac                            <  2:3109624/91‑1 (MQ=255)

                                                                 ttAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACt                           <  2:161263/91‑1 (MQ=255)

                                                                 ttAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACt                           <  2:1713921/91‑1 (MQ=255)

                                                                     gAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATa                       <  1:341933/91‑1 (MQ=255)

                                                                        aaTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACtt                    <  1:1897047/91‑1 (MQ=255)

                                                                        aaTCTCTTACTGCGTTTTCTATGTTATGACCCCACCATCCTGGTACAAATTTTCGCTGCAAGATTGTACTGAAGTCAAACAACTAATACtt                    >  1:1575312/1‑91 (MQ=255)

                                                                         aTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACttt                   >  1:1738366/1‑91 (MQ=255)

                                                                         aTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACttt                   >  2:2516597/1‑91 (MQ=255)

                                                                         aTCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACttt                   <  1:1247193/91‑1 (MQ=255)

                                                                           ctctTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTtat                 >  2:7429/1‑91 (MQ=255)

                                                                           ctctTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTtat                 <  2:2769695/91‑1 (MQ=255)

                                                                           ctctTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTtat                 >  1:2612415/1‑91 (MQ=255)

                                                                                actgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGtt            >  2:2095179‑M2/11‑91 (MQ=255)

                                                                                actgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGtt            <  2:1159583‑M2/81‑1 (MQ=255)

                                                                                 ctgctttttCTATGTTATTACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGttt           >  2:710358‑M2/10‑91 (MQ=255)

                                                                                 ctgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGttt           <  2:1348255‑M2/82‑1 (MQ=255)

                                                                                   gctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTg         <  2:1862006‑M2/84‑1 (MQ=255)

                                                                                        ttCTATGTTATGACCCCACCATCCTGTTACAATTTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGc    <  2:557878‑M2/89‑1 (MQ=255)

                                                                                        ttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGc    <  1:160686‑M2/89‑1 (MQ=255)

                                                                                          cTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCta  >  1:239029/1‑91 (MQ=255)

ACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTCAATTAAGAAAATCTCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTA  >  USA300TCH1516_ALE/2008901‑2009081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.