| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2057377 = | 198 (0.970) | 27 (0.150) | 13/138 | NT | 16.3% | intergenic (+134/+158) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2057415 = | 106 (0.600) | intergenic (+172/+120) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein | |||||
AATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2057477‑2057377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT > USA300TCH1516_ALE/2057415‑2057504 AATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATAT < 2:1481262/91‑1 TTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGC < 1:1196449/91‑1 TTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGC < 2:1435221/91‑1 TTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGC < 2:310365/91‑1 TTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCT < 1:49852/91‑1 TTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCT < 1:49853/91‑1 TTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCT < 1:888803/91‑1 TTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTG > 2:394771/1‑91 TTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTG < 2:825970/91‑1 TACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGG < 2:427413/91‑1 TACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGG < 2:2370345/91‑1 ACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGG > 2:1315502/1‑91 CTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGG > 2:3776222/1‑91 CTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGG < 2:3530918/91‑1 CTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGG > 1:2631549/1‑91 TTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGG < 1:339394/91‑1 TTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGT < 1:2317911/91‑1 TTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGT < 2:479777/91‑1 TGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT > 1:1085029/1‑91 TGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT < 2:3826222/91‑1 ATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCCTGTGCTGGGGGTTCCTCATACAA > 2:1026671/1‑91 TTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAAT > 1:3709632/1‑91 AGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGCGCATCTTGCATGTATAAACAAATAGGCTAT > 2:3284849/1‑91 CCAGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATCAACAAATAGGCTATTCAAAGTA > 2:573511/1‑91 CCAGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTA > 1:544561/1‑91 CAGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAA > 2:453788/1‑91 AGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAA > 2:858100/1‑91 AGCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAA > 2:859483/1‑91 GCAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAA > 1:1885303/1‑91 CAAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAAT > 2:1854869/1‑91 AAGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATT > 1:3814098/1‑91 AGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTA > 2:3801793/1‑91 AGCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTA > 2:2491337/1‑91 GCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAC > 1:2849231/1‑91 GCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAC > 1:2239604/1‑91 GCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAC > 1:750263/1‑91 GCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAC > 1:3574247/1‑91 GCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAC > 1:3716767/1‑91 GCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAC > 1:3716733/1‑91 GCTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTAC > 1:1424707/1‑91 CTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACT > 1:3835395/1‑91 CTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACT > 2:2925033/1‑91 CTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACT > 1:1637788/1‑91 CTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACT > 1:180986/1‑91 CTATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACT > 2:2054821/1‑91 TATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTC > 1:2981708/1‑91 TATATAAAGCATATGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTC > 2:2504863/1‑91 CTGGGGGTTTCTCATACCATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCC > 1:2130132/1‑91 CTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCC < 2:2177855/91‑1 TGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCT < 1:667574/91‑1 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTT < 1:1944186/91‑1 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTT > 2:2697777/1‑91 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTT > 1:3217523/1‑91 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTT < 1:1944230/91‑1 GGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTT > 1:2104929/1‑91 GGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTT > 1:501480/1‑91 GGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTT > 1:3530524/1‑91 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC > 1:127303/1‑91 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC > 2:518219/1‑91 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC < 1:1488702/91‑1 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC > 1:2269861/1‑91 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC > 2:2224121/1‑91 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTC < 2:1379730/91‑1 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC < 2:2991518/91‑1 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC < 2:2990233/91‑1 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC < 2:2732063/91‑1 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC > 1:1932579/1‑91 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC > 1:932726/1‑91 GGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCC > 1:3951226/1‑91 GTTTCTCATACAATATGGATCGAGCGTCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCT < 1:3674575/91‑1 GTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCT < 1:709379/91‑1 TTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTC > 1:1535516/1‑91 TTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT > 1:2706856/1‑91 AATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAAAGCATATGCTGGGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2057477‑2057377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCT > USA300TCH1516_ALE/2057415‑2057504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |