| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2057471 | 172 (0.840) | 14 (0.080) | 7/132 | NT | 7.7% | intergenic (+228/+64) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2057483 | 196 (1.170) | intergenic (+240/+52) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein | |||||
AATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2057368‑2057471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggctattcaaagtTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAA < USA300TCH1516_ALE/2057483‑2057394 AATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATA < 2:1359346/91‑1 ATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAG < 1:1373791/91‑1 TATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGG < 1:1580047/91‑1 TATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGG < 1:3266/91‑1 TTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCT < 2:3688527/91‑1 TTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCT < 1:242917/91‑1 TTAAGAACCCCCAGCATATGCTGTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCT < 1:243076/91‑1 AGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATT > 2:39442/1‑91 GAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTC < 2:35159/91‑1 GAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTC > 2:2518593/1‑91 GAACCCCCAGCAGATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTC < 2:3295054/91‑1 TTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTA < 1:1595208/91‑1 TATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTAC < 2:1843988/91‑1 TATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTAC < 1:902504/91‑1 TATATAGCTTGCTGGGGGTTTCTCATACAATACGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAATTTTGAGTAATTTTAC < 1:3363062/91‑1 TATATAGCGTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTAC < 2:747182/91‑1 ATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACT < 1:1498445/91‑1 ATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACT < 1:888507/91‑1 ATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACT < 1:912492/91‑1 GCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAA < 1:3188999/91‑1 CTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAAT < 1:435628/91‑1 CTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAAT < 1:435662/91‑1 CTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAAT < 2:1112542/91‑1 TTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATA < 1:3267969/91‑1 GGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATT < 2:1564106/91‑1 ATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAG > 2:1234322/1‑91 ATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAG > 2:1234328/1‑91 ATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAG < 1:1589130/91‑1 ATTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAG > 2:1570484/1‑91 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGC > 1:1106384/1‑91 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGC < 1:2851485/91‑1 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGC < 1:3127253/91‑1 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGC > 2:1767694/1‑91 TTCAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGC > 1:3918799/1‑91 CAAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTA > 2:2771282/1‑91 AAAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGTTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTAT < 1:3323593/91‑1 AAGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATA < 1:156329/91‑1 AGTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATAT > 1:1549696/1‑91 GTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATA > 2:2081118/1‑91 GTTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATA > 2:51020/1‑91 TTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAA > 2:1444785/1‑91 AATATTAAGAACCCCCAGCATATGCTTTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2057368‑2057471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggctattcaaagtTTGAGTAATTTTACTTTGAATAGCCTATTTGTTTATACATGCAAGATGCTCGATCCATATTGTATGAGAAACCCCCAGCAAGCTATATAA < USA300TCH1516_ALE/2057483‑2057394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |