| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2057471 | 172 (0.840) | 14 (0.080) | 7/132 | NT | 7.7% | intergenic (+228/+64) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2057483 | 196 (1.170) | intergenic (+240/+52) | USA300HOU_RS10370/USA300HOU_RS10375 | hypothetical protein/hypothetical protein | |||||
Only 100 of 261 total aligned reads displayed.
TTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCTTGATG > USA300TCH1516_ALE/2057394‑2057573 | tataGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactt < 1:156329‑M2/91‑5 (MQ=255) gCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttgaa > 1:1106384‑M2/1‑83 (MQ=255) gCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttgaa > 1:3918799‑M2/1‑83 (MQ=255) gCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAactttgaa < 1:2851485‑M2/91‑9 (MQ=255) ctgggggttTCTCATACCATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGcc > 1:2130132‑M2/10‑91 (MQ=255) ctgggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGcc < 2:2177855‑M2/82‑1 (MQ=255) gggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCtt > 1:2104929‑M2/8‑91 (MQ=255) gggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCtt > 1:3217523‑M2/8‑91 (MQ=255) gggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCtt < 1:1944186‑M2/84‑1 (MQ=255) ggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCttt > 1:501480‑M2/7‑91 (MQ=255) ggggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCttt > 1:3530524‑M2/7‑91 (MQ=255) gggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTc > 1:2269861‑M2/6‑91 (MQ=255) gggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTc > 2:2224121‑M2/6‑91 (MQ=255) ggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTcc < 2:2990233‑M2/87‑1 (MQ=255) ggttTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTcc > 1:932726‑M2/5‑91 (MQ=255) tTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCctct > 1:2706856‑M2/2‑91 (MQ=255) tctcATACAATATGGATCGAGCATCTTGCATGTATAAACAAATATGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCtt < 2:3545135/91‑1 (MQ=255) tcATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCa > 1:1397263/1‑91 (MQ=255) tcATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCa < 2:3489202/91‑1 (MQ=255) cATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa < 1:3288153/91‑1 (MQ=255) cATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa > 2:1513035/1‑91 (MQ=255) cATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa > 1:197703/1‑91 (MQ=255) cATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaa < 2:497114/91‑1 (MQ=255) aTACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCaaa < 2:3042525/91‑1 (MQ=255) tACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAAt < 2:1259680/91‑1 (MQ=255) tACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAAt < 2:3203204/91‑1 (MQ=255) cAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAg > 1:3474547/1‑91 (MQ=255) tatGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCt > 1:3672181/1‑91 (MQ=255) atGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtt < 2:3372716/91‑1 (MQ=255) atGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtt > 2:136562/1‑91 (MQ=255) tGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCttt < 2:1033072/91‑1 (MQ=255) ggATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCttta < 2:525415/91‑1 (MQ=255) gATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttat < 1:2926070/91‑1 (MQ=255) tCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttattt < 1:893769/91‑1 (MQ=255) tCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttattt < 1:892794/91‑1 (MQ=255) tCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCtttattt > 2:1641670/1‑91 (MQ=255) aGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTaaa < 2:668275/91‑1 (MQ=255) aGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTaaa < 2:2721768/91‑1 (MQ=255) aGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTACTTaaa > 2:3639451/1‑91 (MQ=255) gCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAAt < 1:3633710/91‑1 (MQ=255) aTCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTg < 1:149448/91‑1 (MQ=255) tCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTgg > 2:3960649/1‑91 (MQ=255) cTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGa > 2:2043597/1‑91 (MQ=255) ttGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGAt < 2:407423/91‑1 (MQ=255) ttGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGAt > 1:443259/1‑91 (MQ=255) ttGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGAt < 2:3289464/91‑1 (MQ=255) gCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTa > 2:318853/1‑91 (MQ=255) cATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTAt < 1:1785725/91‑1 (MQ=255) cATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTAt < 2:584592/91‑1 (MQ=255) tGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGt < 1:431234/91‑1 (MQ=255) tGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGt > 2:2790695/1‑91 (MQ=255) tGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGt > 1:3175762/1‑91 (MQ=255) tGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGt < 2:311331/91‑1 (MQ=255) tGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGt < 1:3350356/91‑1 (MQ=255) tGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGt < 1:2287600/91‑1 (MQ=255) gTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGtt > 1:651521/1‑91 (MQ=255) gTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGtt < 1:721704/91‑1 (MQ=255) ataAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTAt > 2:871174/1‑91 (MQ=255) aaaCAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTg > 1:1507239/1‑91 (MQ=255) aaCAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTgg > 1:3826109/1‑91 (MQ=255) aaCAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTgg < 1:126061/91‑1 (MQ=255) aCAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGa > 1:85181/1‑91 (MQ=255) aaTAGGCTATTCAAAGTAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaaccc < 2:1564106‑M2/91‑63 (MQ=255) tAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTc < 2:1541500/91‑1 (MQ=255) ggCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCTTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCtt > 1:1141177/1‑91 (MQ=255) gCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTa < 2:2605139/91‑1 (MQ=255) cTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTAc > 2:1306566/1‑91 (MQ=255) cTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTAc > 2:2530461/1‑91 (MQ=255) tATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAGATTGGATTATGTTATTGGATTTTCTTAcc < 2:3450606/91‑1 (MQ=255) aTTCAAAGTAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaag < 1:435662‑M2/91‑71 (MQ=255) aTTCAAAGTAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaag < 2:1112542‑M2/91‑71 (MQ=255) aTTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCt > 1:1035234/1‑91 (MQ=255) ttCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTa < 1:1280195/91‑1 (MQ=255) tCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTAc > 1:1916606/1‑91 (MQ=255) tCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTAc < 1:137110/91‑1 (MQ=255) tCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTAc < 1:3077705/91‑1 (MQ=255) tCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTATTCAAATAGTCTTTCTTTAAATTGGATTATGTTATTGGATTTTCTTACCTAc > 2:1208088/1‑91 (MQ=255) cAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACa < 2:1402643/91‑1 (MQ=255) aaaGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaa > 1:2803708/1‑91 (MQ=255) aaaGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaa > 1:2434838/1‑91 (MQ=255) aGTAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaagctatat < 1:912492‑M2/91‑77 (MQ=255) aGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaaaa < 2:2746186/91‑1 (MQ=255) aGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaaaa > 1:3101252/1‑91 (MQ=255) gTAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaagctatata < 2:1843988‑M2/91‑78 (MQ=255) gTAAAATTACTCAAaatttgaatagcctatttgtttatacatgcaagatgctcgatccgtattgtatgagaaacccccagcaagctatata < 1:3363062‑M2/91‑78 (MQ=255) gTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaaaaa < 1:3842548/91‑1 (MQ=255) gTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACaaaaa < 2:3310250/91‑1 (MQ=255) tAAAATTACTCAAactttgaatagcctatttgtttatacatgcaagatgctcgatccatattgtatgagaaacccccagcaagctatataa < 1:1595208‑M2/91‑79 (MQ=255) tAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAAc < 2:2449347/91‑1 (MQ=255) aaaTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGa > 1:374463/1‑91 (MQ=255) aaaTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGa < 2:1000954/91‑1 (MQ=255) aagtACTCAAACTTTGAATAGCCTTTTCTCTTCAAATAGTCAAGATTTAAATTGGATTATGTTATTGGATAAAATAAAATACAAAAACGAt < 2:1721835/88‑1 (MQ=255) aaTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGAt > 2:1210524/1‑91 (MQ=255) aTTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGAtt > 1:764877/1‑91 (MQ=255) tACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTc > 2:3836214/1‑91 (MQ=255) tACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTc < 1:2727601/91‑1 (MQ=255) tACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTc > 1:698119/1‑91 (MQ=255) tCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGCTTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCTTg < 1:3420393/91‑1 (MQ=255) aaaCTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCTTGAt > 1:3813537/1‑91 (MQ=255) aaCTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCTTGAtg < 2:465525/91‑1 (MQ=255) | TTATATAGCTTGCTGGGGGTTTCTCATACAATATGGATCGAGCATCTTGCATGTATAAACAAATAGGCTATTCAAAGTAAAATTACTCAAACTTTGAATAGCCTTTCCTCTTCAAATAGTCTTTATTTAAATTGGATTATGTTATTGGATTTTCTTACCTACAAAAACGATTTCTTGATG > USA300TCH1516_ALE/2057394‑2057573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |