| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2082368 = | 234 (1.150) | 16 (0.090) | 9/138 | NT | 8.0% | intergenic (+9/+315) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein |
| ? | USA300TCH1516_ALE | 2082406 = | 167 (0.950) | intergenic (+47/+277) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein | |||||
CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2082468‑2082368‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTAT > USA300TCH1516_ALE/2082406‑2082495 CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAG > 1:673026/1‑91 AAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATGCTCATCAGA < 1:1979658/91‑1 AAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGA > 1:3879260/1‑91 AAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGAAATAATTAAAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGA < 2:800843/91‑1 AAGTTGCGGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGA < 1:1957899/91‑1 AGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGAT > 1:113715/1‑91 AGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGAT < 2:2644489/91‑1 AGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGAT > 1:3208618/1‑91 AGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTCTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGAT > 2:3473361/1‑91 TTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTA < 1:3707461/91‑1 TTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTA < 1:3707695/91‑1 TTGCTAAATAAAATATATCATATGATACTTTGAAAAAAGGAATAATTTAAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTA < 2:2799864/91‑1 TGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT < 1:3404408/91‑1 TGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT < 2:3201288/91‑1 TGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT < 2:3201289/91‑1 TGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT < 2:2551950/91‑1 TGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT < 1:2055273/91‑1 TGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT < 2:2378194/91‑1 TGCTGAAAAAAATATATCTTATGATACTTTGAAAGAAGAAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTAT < 2:3520387/91‑1 GCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATT < 1:448196/91‑1 GCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATT > 2:3764306/1‑91 CTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTG < 2:3865709/91‑1 TGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGG > 1:3164547/1‑91 TGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGG < 2:1099296/91‑1 TGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGG > 2:60490/1‑91 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGT > 2:1428922/1‑91 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGT > 2:2935711/1‑91 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGT > 1:1494757/1‑91 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGT < 1:2666943/91‑1 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGT < 1:2501889/91‑1 GAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTAATACTCCTAAGATTATTGGa > 2:920216/1‑90 GAATAAAATATATCTTACGATACTTTGAAAGATGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGT < 1:3384750/91‑1 AATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT < 1:3280850/91‑1 AATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT < 1:2443787/91‑1 AATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT > 1:1275585/1‑91 AAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATCAGATATATTT > 2:2171128/1‑91 AAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTA > 1:3952818/1‑91 AAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTA > 1:2038090/1‑91 AAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTA > 1:2038002/1‑91 AAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAT > 2:2667298/1‑91 AAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAT > 2:1630326/1‑91 AAACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCATTCTTTCAAAGTATCATTAGATATATTTTAT > 2:2671081/1‑91 AACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATT > 1:1332442/1‑91 ACCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCGAAGTATCATAAGATATATTTTATTC > 1:3675794/1‑91 CCAATAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCA > 1:3759101/1‑91 TAATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAA > 1:1237322/1‑91 AATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAAC > 1:1219401/1‑91 AATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAAC > 2:1110587/1‑91 AATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAAC > 1:2651361/1‑91 ATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACT > 1:995948/1‑91 ATCCGAGTCATACTCATCAGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACT > 1:3890716/1‑91 GATTATTGGTTTTTTATTTTTTATATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTTAGCAACTTGTCAAACACTATACCTAA > 2:3452038/1‑91 GATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAA > 2:148203/1‑91 GATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAA < 2:1274170/91‑1 ATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAT > 2:1605730/1‑91 ATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAT < 2:231903/91‑1 ATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAT > 2:885026/1‑91 ATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAT > 1:3439827/1‑91 ATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAT > 1:3439826/1‑91 TTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATT < 2:1889988/91‑1 TTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATT < 2:390617/91‑1 TATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTA < 2:3936548/91‑1 TATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTA < 2:3936676/91‑1 TATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTA < 1:1588063/91‑1 TATTGGATTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTA > 1:3078598/1‑91 ATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAG > 1:504493/1‑91 TTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGT < 1:1868491/91‑1 TTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGT < 2:1437973/91‑1 TTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGT < 1:1454746/91‑1 TTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGT > 2:2985163/1‑91 TTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGT < 2:1437884/91‑1 TGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTT > 1:3105903/1‑91 TGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTT > 1:3191674/1‑91 GGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTT < 2:3862630/91‑1 GGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTT > 1:918184/1‑91 GTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTT < 1:2520521/91‑1 GTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTT > 2:2322396/1‑91 TTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTA > 2:294136/1‑91 TTTTTTATTTTTAAAATTATTCCTCCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTCGTCAAACACTATACCTAATTAGTTTTA > 2:2549512/1‑91 TTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTATTAT > 1:3293235/1‑91 CAAGTTGCTGAATAAAATATATCTTATGATACTTTGAAAGAAGGAATAATTTTAAAAATAAAAAACCAATAATCCGAGTCATACTCATCAGATTATTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2082468‑2082368‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTAT > USA300TCH1516_ALE/2082406‑2082495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |