BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082368 =	234 (1.150)	16 (0.090)	9/138	NT	8.0%	intergenic (+9/+315)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082406 =	167 (0.950)	16 (0.090)	9/138	NT	8.0%	intergenic (+47/+277)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 290 total aligned reads displayed.

ATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATA  >  USA300TCH1516_ALE/2082316‑2082496

aTGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGttt                                                                                            >  1:1617506/1‑91 (MQ=255)

aTGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGttt                                                                                            >  2:2735570/1‑91 (MQ=255)

 taaaatatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGATTATTGGtttt                                                                                           >  1:2038002‑M1/52‑91 (MQ=255)

 taaaatatatcttatgatactttgaaagaaggaataattttaaaaataaaaAACCAATAATCTGATGAGTATGACTCGGATTATTGGtttt                                                                                           >  1:3952818‑M1/52‑91 (MQ=255)

    aTTTGATTCAATTGCT‑AAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttat                                                                                       >  2:519025/1‑91 (MQ=255)

     tttGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttat                                                                                       >  1:1715254/1‑91 (MQ=255)

     tttGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttat                                                                                       >  2:672605/1‑91 (MQ=255)

       tGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattt                                                                                     >  1:107443/1‑91 (MQ=255)

        gATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttatttt                                                                                    >  2:2939419/1‑91 (MQ=255)

          ttCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTtttttattttta                                                                                  <  2:2965468/91‑1 (MQ=255)

           tCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaa                                                                                 >  1:1377000/1‑91 (MQ=255)

           tCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaa                                                                                 <  2:2898500/91‑1 (MQ=255)

           tCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaa                                                                                 <  2:327370/91‑1 (MQ=255)

            cAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGAATGACTCGGATTATTGGTTTTTTATTTTTaaa                                                                                >  1:2790833/1‑91 (MQ=255)

             aaTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTaaaa                                                                               >  1:1129444/1‑91 (MQ=255)

              aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAat                                                                              >  1:2863504/1‑91 (MQ=255)

              aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAat                                                                              <  2:1258953/91‑1 (MQ=255)

              aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAat                                                                              >  1:2946384/1‑91 (MQ=255)

              aTTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAat                                                                              <  2:3603224/91‑1 (MQ=255)

               ttGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAatt                                                                             >  2:3328229/1‑91 (MQ=255)

               ttGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAatt                                                                             <  1:2347295/91‑1 (MQ=255)

               ttGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAatt                                                                             <  1:3876887/91‑1 (MQ=255)

                tGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGCATATTGGTTTTTTATTTTTAAAatta                                                                            >  1:3665779/1‑91 (MQ=255)

                tGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAatta                                                                            <  1:974985/91‑1 (MQ=255)

                tGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAatta                                                                            <  1:3728066/91‑1 (MQ=255)

                 gCTAAAGCGCTTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTTAAattat                                                                           >  2:1350847/1‑91 (MQ=255)

                 gCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAattat                                                                           <  1:2928343/91‑1 (MQ=255)

                 gCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAattat                                                                           >  1:195682/1‑91 (MQ=255)

                   tAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTc                                                                         >  1:1141971/1‑91 (MQ=255)

                   tAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTc                                                                         >  1:461059/1‑91 (MQ=255)

                    aaaGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATAACTTGGATTATTGGTTTTTTATTTTTAAAATTATTcc                                                                        <  1:3156172/91‑1 (MQ=255)

                     aaGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCct                                                                       <  1:764178/91‑1 (MQ=255)

                        cGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttct                                                                    <  2:2420864/91‑1 (MQ=255)

                         gATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttctt                                                                   <  1:1228161/91‑1 (MQ=255)

                         gATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCcttctt                                                                   <  2:3475253/91‑1 (MQ=255)

                             gatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCaa                                                               >  2:146890/1‑91 (MQ=255)

                             gatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCaa                                                               >  1:817624/1‑91 (MQ=255)

                             gatgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCaa                                                               >  1:3102898/1‑91 (MQ=255)

                              atgaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCaaa                                                              <  2:2161813/91‑1 (MQ=255)

                                gaCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGt                                                            <  1:1783715/91‑1 (MQ=255)

                                 aCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTa                                                           >  1:620920/1‑91 (MQ=255)

                                 aCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTa                                                           <  2:985999/91‑1 (MQ=255)

                                 aCTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTa                                                           <  1:1315079/91‑1 (MQ=255)

                                     aaGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTCTAAAATTATTCCTTCTTTCAAAGTATCAt                                                       >  1:3170340/1‑91 (MQ=255)

                                      aGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATa                                                      <  1:1877319/91‑1 (MQ=255)

                                       gATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATaa                                                     >  1:376606/1‑91 (MQ=255)

                                        aTAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAACGTATCATAAg                                                    >  2:3635968/1‑91 (MQ=255)

                                         taattaatTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGa                                                   <  2:2526969/91‑1 (MQ=255)

                                          aattaattTCAACCAATACTCGGAGGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGat                                                  <  1:2210315/91‑1 (MQ=255)

                                             taattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatata                                               >  2:3165949/1‑91 (MQ=255)

                                              aattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatatat                                              <  1:3888899/91‑1 (MQ=255)

                                              aattTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGatatat                                              >  2:1975866/1‑91 (MQ=255)

                                                aaaaaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATCAGATATAttt                                            >  2:2171128‑M2/43‑91 (MQ=255)

                                                  tCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAAATATTCCTTCTTTTAAAGTATCATAAGATATATTTTa                                          >  2:3917815/1‑91 (MQ=255)

                                                  aaaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTa                                          >  1:2038090‑M2/41‑91 (MQ=255)

                                                   aaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAt                                         >  2:2667298‑M2/40‑91 (MQ=255)

                                                   aaaccaataatccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAt                                         >  2:1630326‑M2/40‑91 (MQ=255)

                                                    AACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTAtt                                        <  1:3280850‑M1/91‑1 (MQ=255)

                                                     ACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTc                                       <  1:2501889‑M1/91‑1 (MQ=255)

                                                     ACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTc                                       >  1:1494757‑M1/1‑91 (MQ=255)

                                                     ACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTc                                       <  1:2666943‑M1/91‑1 (MQ=255)

                                                      CCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCa                                      <  2:1099296‑M1/91‑1 (MQ=255)

                                                      CCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCa                                      >  2:60490‑M1/1‑91 (MQ=255)

                                                        AATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGc                                    >  2:3764306‑M1/1‑91 (MQ=255)

                                                         ATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCa                                   <  2:3201289‑M1/91‑1 (MQ=255)

                                                         ATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCa                                   <  1:3404408‑M1/91‑1 (MQ=255)

                                                          TAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTTAAATTATTCCTTTTTTCAAAGTATCATATGATATATTTTATTTAGCaa                                  <  2:2799864‑M1/91‑1 (MQ=255)

                                                          TAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCaa                                  <  1:3707461‑M1/91‑1 (MQ=255)

                                                            atccgagtcatactcatcagattattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACt                                >  1:995948‑M2/31‑91 (MQ=255)

                                                            ATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACt                                <  2:2644489‑M1/91‑1 (MQ=255)

                                                               tgatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGt                             <  1:3825319/91‑1 (MQ=255)

                                                               tgatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGt                             <  1:2984129/91‑1 (MQ=255)

                                                                gatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTc                            >  1:1258345/1‑91 (MQ=255)

                                                                gatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTc                            >  1:3876013/1‑91 (MQ=255)

                                                                gatgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTc                            <  2:3498701/91‑1 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          <  1:1860396/91‑1 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          <  2:467392/91‑1 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          <  1:510982/91‑1 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          >  1:673693/1‑91 (MQ=255)

                                                                  tgaGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCaa                          <  2:3089796/91‑1 (MQ=255)

                                                                    aGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAac                        <  2:1503935/91‑1 (MQ=255)

                                                                    aGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAac                        <  1:1433566/91‑1 (MQ=255)

                                                                          aCTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACtata                  >  1:2248886/1‑91 (MQ=255)

                                                                           cTCGGATCATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATAc                 <  1:1967365/91‑1 (MQ=255)

                                                                            tCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAGCACTATAcc                <  2:861225/91‑1 (MQ=255)

                                                                            tCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATAcc                <  1:215309/91‑1 (MQ=255)

                                                                             cGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCt               <  1:2594332/91‑1 (MQ=255)

                                                                             cGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCt               <  1:3607517/91‑1 (MQ=255)

                                                                              ggATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTa              >  2:1177404/1‑91 (MQ=255)

                                                                               gattattggttTTTTATTTTTTATATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTTAGCAACTTGTCAAACACTATACCTaa             >  2:3452038‑M2/12‑91 (MQ=255)

                                                                                attattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAt            >  1:3439827‑M2/11‑91 (MQ=255)

                                                                                attattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAt            <  2:231903‑M2/81‑1 (MQ=255)

                                                                                 ttattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAAtt           <  2:1889988‑M2/82‑1 (MQ=255)

                                                                                  tattggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTa          <  2:3936676‑M2/83‑1 (MQ=255)

                                                                                    ttggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGt        <  2:1437884‑M2/85‑1 (MQ=255)

                                                                                    ttggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGt        >  2:2985163‑M2/7‑91 (MQ=255)

                                                                                      ggttTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGttt      <  2:3862630‑M2/87‑1 (MQ=255)

                                                                                        ttTTTTATTTTTAAAATTATTCCTCCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTCGTCAAACACTATACCTAATTAGTTTta    >  2:2549512‑M2/3‑91 (MQ=255)

                                                                                          ttttatttttaAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtata  <  1:2542296/91‑1 (MQ=255)

                                                                                          ttttatttttaAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTtata  >  1:1002610/1‑91 (MQ=255)

ATGTATTTGATTCAATTGCTAAAGCGATTGATGACTTAAGATAATTAATTTCAACCAATAATCTGATGAGTATGACTCGGATTATTGGTTTTTTATTTTTAAAATTATTCCTTCTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATA  >  USA300TCH1516_ALE/2082316‑2082496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.