| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2082519 = | 234 (1.150) | 11 (0.060) | 7/142 | NT | 5.3% | intergenic (+160/+164) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein |
| ? | USA300TCH1516_ALE | 2082566 = | 187 (1.040) | intergenic (+207/+117) | aspC/USA300HOU_RS10520 | Aspartate aminotransferase/65 kDa membrane protein | |||||
GCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2082617‑2082519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG > USA300TCH1516_ALE/2082566‑2082655 GCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTG > 2:501910/1‑91 CTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGT < 1:3121006/91‑1 CTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGT > 1:817726/1‑91 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 2:1253500/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 1:3823125/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 1:850370/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 1:850472/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 1:851014/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 2:1651053/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 2:1987513/91‑1 TTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC > 2:607120/1‑91 TTGAATGTTTGAAGTGATTTGCCAAAAATTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTC < 2:77062/91‑1 TGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCC < 1:639483/91‑1 TGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCC > 1:3865709/1‑91 GAATGTTTGAAGTGATTTGCCAAGAGTTATATAAATTGGTTCTATTATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGGCCG < 2:960392/91‑1 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG < 2:960700/91‑1 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG < 2:960337/91‑1 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG > 1:2746195/1‑91 GAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCG < 1:1732286/91‑1 AATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGA > 1:1371346/1‑91 ATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGAT > 1:3572973/1‑91 ATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGAT > 2:3063444/1‑91 ATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGAT > 1:2735905/1‑91 TGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATT > 1:2977883/1‑91 TGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATT > 1:1586508/1‑91 TGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATT > 1:2977930/1‑91 GTTTGAAGTGATTTGCCAAAAGTTATATATATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT < 1:930240/91‑1 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT < 1:108488/91‑1 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT > 1:3247230/1‑91 GTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT < 2:2871812/91‑1 TTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATC > 2:1847319/1‑91 AATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCA > 2:800921/1‑91 AAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAC > 1:2142339/1‑91 ATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAT > 1:2181733/1‑91 CGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCCATTTATATAACTTTTGGCAAATCACTTCAACCATTC > 2:1300260/1‑91 CGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTC > 1:2462394/1‑91 CGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTC > 1:2462960/1‑91 GATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCAT > 2:1922886/1‑91 ATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATC > 1:3067479/1‑91 ATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATC > 2:2919857/1‑91 ATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATC > 1:1649313/1‑91 GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCGCATCTCTACAAAGGTAAAAGGCACCC < 2:750441/91‑1 GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAACTGTAAAAGGCACCC < 2:750310/91‑1 GTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCC < 1:531586/91‑1 GATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACG < 1:933897/91‑1 GATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACG < 1:1099296/91‑1 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGA > 2:3857006/1‑91 ATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGA > 1:2092137/1‑91 TTTATTATAGAACCAATTTATATAACTTTTGGCAACTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAT > 2:908707/1‑91 TTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAT < 2:3943285/91‑1 TTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAT > 2:910240/1‑91 TTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAT > 1:2809018/1‑91 TTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAT < 1:2672244/91‑1 TTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATT < 1:1613638/91‑1 TTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATT < 1:611219/91‑1 TATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG < 2:873837/91‑1 GCTTGAATGTTTGAAGTGATTTGCCAAAAGTTATATAAATTGGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2082617‑2082519‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTG > USA300TCH1516_ALE/2082566‑2082655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |